GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002522-TA|BGIBMGA002522-PA|undefined
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   1.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   2.5  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   3.4  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    23   7.8  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    23   7.8  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 72  DGITSISNGLLLETG---RLLWRGGEAYLYTWIYTNCG 106
           D I  ISNG ++ETG    L+ R G AY   W     G
Sbjct: 786 DLILCISNGRIVETGTHEELIKRDGGAYKKMWFQQAMG 823


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 85  TGRLLWRGGEAYLYTWIY 102
           TG L++ GG  +LYT +Y
Sbjct: 76  TGPLVYPGGHVFLYTLLY 93


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 66  KGIRLNDGITSISNGLLLETGRLLWRGGEAYLYTWIY 102
           K IRL + +     G++ + GRL  +G E Y+  +IY
Sbjct: 163 KSIRLWERLNFTRAGIIKDAGRL--KGHEGYVDAYIY 197


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 13  EVSKGLGRMFY--LVNP--QDSVFETQKEVPNFYVQSWPYFFT 51
           +V +G  R+FY  L N   +D+ F+     PN  V S   FFT
Sbjct: 259 DVYEGERRLFYRDLSNEVIKDTTFQQLANFPNVLVTSHQAFFT 301


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 40  NFYVQSWPYFFTFLILE 56
           NF V ++ YFF F I++
Sbjct: 126 NFIVPAFQYFFAFFIID 142


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,195
Number of Sequences: 5004
Number of extensions: 18981
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 5
length of query: 107
length of database: 2,362,478
effective HSP length: 64
effective length of query: 43
effective length of database: 2,042,222
effective search space: 87815546
effective search space used: 87815546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)