GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002522-TA|BGIBMGA002522-PA|undefined
         (107 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   1.8  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            21   7.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    21   7.2  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 33   ETQKEVPNFYVQSWPY 48
            E +K+V  F++ SWPY
Sbjct: 1207 EPKKDVLLFHMSSWPY 1222


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 87   RLLWRGGEAYLYTWI--YTNC 105
            R +WRG E YL   +   TNC
Sbjct: 1605 RFVWRGKECYLPCPVQSVTNC 1625


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 22  FYLVNPQDSVFETQKEVPNFYVQSW 46
           F  +NP++ +  TQ  V    VQ W
Sbjct: 145 FTKMNPRELLLNTQSSVCTPEVQQW 169


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,728
Number of Sequences: 2123
Number of extensions: 3993
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 107
length of database: 516,269
effective HSP length: 56
effective length of query: 51
effective length of database: 397,381
effective search space: 20266431
effective search space used: 20266431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)