GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002522-TA|BGIBMGA002522-PA|undefined
         (107 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...    52   1e-07
Z69664-5|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    26   4.8  
AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 18  LGRMFYLVNPQDSVFETQKEVPNFYVQSWPYFFTFLILEHIILKLQGKKG-IRLNDGITS 76
           L   FYL++P ++  E+  +VPN+  +   ++  FL  E  IL + G +    LND ITS
Sbjct: 29  LRHAFYLISPYETTVESIDDVPNYNAEVSAWWLVFLTAEFFILFISGHEDRFALNDSITS 88

Query: 77  ISNGLLLETGRLLWRGGEAYLYTWIYTN 104
           I  G+L +  +   R    +LY  ++ N
Sbjct: 89  ICAGMLSQCFKFGGRAVAIFLYVIVWDN 116


>Z69664-5|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
          protein K04D7.5 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 7  NSTHSSEVSKGLGRMFYLVNPQDSVFETQKEVPNFYVQSWPYFFTFLILEHII---LKLQ 63
          N T  +E  KG   MF L+   D + E + +  N    +        IL H+I     + 
Sbjct: 25 NQTRETEKEKGDDEMFRLLQATDEILENKAKSMNLSSLN-----VRSILHHLIKYPSTID 79

Query: 64 GKKGIRLNDGITSISN 79
             GIR ND + S+ N
Sbjct: 80 VLLGIRENDDLPSVRN 95


>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 26  NPQDSVFETQKEVPNFYVQSWPYFFTFLILEHIILKLQGKKGIRLNDGITSISNGLLLET 85
           NP    F+    +  FY   +  F T     + ++ L+ K  +  N  I SI  G+L  T
Sbjct: 225 NPPTDSFQVFDYIFPFYTSVF-LFSTLYFFAYCVI-LRRKAYVERNLIIPSIGYGILWTT 282

Query: 86  GRLLW 90
           G  LW
Sbjct: 283 GMTLW 287


>AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical
           protein Y45F10B.11 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 34  TQKEVPNFYVQSWPYFFTFLI 54
           TQ  +P  Y+  WP FFTF +
Sbjct: 153 TQLSIPFIYI--WPLFFTFTL 171


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,333
Number of Sequences: 27539
Number of extensions: 98458
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 4
length of query: 107
length of database: 12,573,161
effective HSP length: 71
effective length of query: 36
effective length of database: 10,617,892
effective search space: 382244112
effective search space used: 382244112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)