GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002522-TA|BGIBMGA002522-PA|undefined
         (107 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   0.79 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   9.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 0.79
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 73  GITSISNGLLLETGRLLW 90
           G+T+++  +L  TG++LW
Sbjct: 118 GVTTMTKAILHYTGKVLW 135


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 71  NDGITSISNGLLLETGRLLWRGGEAY 96
           N  +T ++  +L  TG+++W+    Y
Sbjct: 116 NYEVTIMTKAILHHTGKVVWKPPAIY 141


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 52  FLILEHIILKLQG 64
           F+IL  II+KL G
Sbjct: 268 FMILNEIIMKLVG 280


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 52  FLILEHIILKLQGKKGI 68
           +L+  H+IL  QG+  I
Sbjct: 176 YLMRRHLILSCQGRLNI 192


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 52  FLILEHIILKLQGKKGI 68
           +L+  H+IL  QG+  I
Sbjct: 176 YLMRRHLILSCQGRLNI 192


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 52  FLILEHIILKLQGKKGI 68
           +L+  H+IL  QG+  I
Sbjct: 227 YLMRRHLILSCQGRLNI 243


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 52  FLILEHIILKLQGKKGI 68
           +L+  H+IL  QG+  I
Sbjct: 176 YLMRRHLILSCQGRLNI 192


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,117
Number of Sequences: 429
Number of extensions: 1108
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 140,377
effective HSP length: 50
effective length of query: 57
effective length of database: 118,927
effective search space:  6778839
effective search space used:  6778839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)