GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002521-TA|BGIBMGA002521-PA|IPR000101|Gamma-
glutamyltranspeptidase
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...   114   2e-26
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...   114   3e-26
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    29   1.2  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    29   1.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   2.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   6.4  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score =  114 bits (275), Expect = 2e-26
 Identities = 125/545 (22%), Positives = 229/545 (42%), Gaps = 41/545 (7%)

Query: 9   GMVVAPHHLATQSAIDILREGGTXXXXXXXXXXTISVVYPHMNSIGGDSFWLIVPPHGDP 68
           G+V       +Q  + IL+ GG            I  V    + IGG  F LI  P+G  
Sbjct: 100 GVVATEEETCSQIGVGILKAGGNAVDAAIASGICIGAVNSFSSGIGGGGFMLIRHPNGTA 159

Query: 69  IAIEASGTAGSLATEDFFKGYDKIPYLGPKAAITVAGAVGGWQEALNYVTENGYQRISVS 128
            ++    TA + A+++ F G   +  +G   ++ V G + G++ A        Y  +   
Sbjct: 160 HSLNFRETAPAGASKNMFHGNSTLSQVGG-LSVAVPGEIAGYERAWKM-----YGSLPWH 213

Query: 129 RLLADAIRYAEEGVSVTQSYISNLEK--FKDLNVSSEFRRIYLLDGNNPKMGDILYQKEL 186
           +L    IR   +G+ + +   S + +  F       ++ +I+  +G    +G+  Y+  L
Sbjct: 214 KLFEPTIRLMRDGMPMPKELASRIRRPEFSYFKTHPDWSKIFAPEGVFLHVGEKFYRPAL 273

Query: 187 GTTLRRLAENGLNSFYKGELARTIAEDMATVGMPITESDLQNFTAIRKTPLRLLLKQGEV 246
            +TL  +A+ G   FY G++A  + + +   G  +T  D+ NF+ + + P+       EV
Sbjct: 274 ASTLEEIAKFGPEVFYTGKIAERLVKFVQQQGGILTMEDMANFSVVVEEPIYGNFYDREV 333

Query: 247 FNLPPPTQG---LVSLNILG---VLEKLNIDGKNEGEL-VHATVEATKQAFEMRNDYITD 299
                P  G   ++ LN+L    + E  +I G    ++ VH  +E  K     R   + D
Sbjct: 334 ITCGSPCSGEALILGLNVLSKVDLSEGTSILGCEMTDIGVHHLIETMKWMSAGRT-VLAD 392

Query: 300 PK-YMKID-PNSLLTSQHLSKVASKISLDRAASVGQGKG----PGD--TIWMGAMDSKGF 351
           P  Y   D    LL+ ++  ++ + IS +R       K     P D  T  +  +D    
Sbjct: 393 PTFYNNTDHVEQLLSLEYADEIRNNISNERTFDFTHYKAEYDFPNDHGTTHLSVIDKDNM 452

Query: 352 SVSFIQSVYHEFGSTVVLPKTGIL-------WQNRGV--SFTLEKDKLLTLQPGKKPFHT 402
           +V    S+   FGS ++ P+TGI+       + + G+  +F L       + PGK+P  +
Sbjct: 453 AVGLTASINLMFGSQLLEPETGIILNDHMDDFASPGIVNAFGLSPSPYNFIAPGKRP-QS 511

Query: 403 LNLATARLNDGRV-MIFGTRGGDGQPQTQSAIFYRHVGQGLNLQAAVSAPRWLYGRIAGD 461
             + T  + +G V M+ G  GG            +    G +L  +V +PR+ +  +   
Sbjct: 512 SAVPTILVYNGEVEMVLGGSGGSRIVTAVLDTIIKKYKWGKSLLESVESPRFHHQLM--- 568

Query: 462 AEDTLKIESRFSEETVNYLKERGHDVEILPEFSEKVGHAGALVRHPNGVMEGAFDPRCDG 521
             + + I+     E +  L++ GH V+++P          A+ R  NG + G  D R   
Sbjct: 569 -PNIVYIDETVEIEVLRALEKFGHIVDLIP-VQYPFSEIQAVFR-TNGTLYGLSDSRKQA 625

Query: 522 SASGF 526
            A+ +
Sbjct: 626 VAAAY 630


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score =  114 bits (274), Expect = 3e-26
 Identities = 122/543 (22%), Positives = 223/543 (41%), Gaps = 36/543 (6%)

Query: 8   QGMVVAPHHLATQSAIDILREGGTXXXXXXXXXXTISVVYPHMNSIGGDSFWLIVPPHGD 67
           +G V +   + +   + +L +GG            I VV    + IGG  F LI  P+  
Sbjct: 81  RGAVASEVPVCSDIGVSMLADGGNAVDAAIASTFCIGVVNFFSSGIGGGGFMLIKHPNET 140

Query: 68  PIAIEASGTAGSLATEDFFKGYDKIPYLGPKAAITVAGAVGGWQEALNYVTENGYQRISV 127
             ++     A    ++  F     +  +GP  +I + G + G  EA        +  +  
Sbjct: 141 AQSLTFREIAPGNVSKHMFDKNPMLAQVGP-LSIAIPGELAGLYEAWK-----SHGLLDW 194

Query: 128 SRLLADAIRYAEEGVSVTQSY--ISNLEKFKDLNVSSEFRRIYLLDGNNPKMGDILYQKE 185
           S+LL   ++ A EG  VT++   +  L +   L     ++ I + +G   + GD +++  
Sbjct: 195 SKLLEPNVKLAREGFPVTRAMERVLKLPEMAHLLKDPIWQPILMPNGKVLRAGDKMFRPA 254

Query: 186 LGTTLRRLAENGLNSFYKGELARTIAEDMATVGMPITESDLQNFTAIRKTPLRLLLKQGE 245
              TL  +A  G+  FY+GEL  ++ + +   G  +T  D  N++ +    L    +  +
Sbjct: 255 YAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTSYRGHD 314

Query: 246 VFNLPPPTQGLVSLNILGVLE--KLNIDGKNEGELVHATVEATKQAFEMRNDYITDPKYM 303
           V+    PT G   +  L +L+   LN       + +H  VEA K     R  +  DP ++
Sbjct: 315 VYTCTLPTSGPALIEGLNILDGYPLNTPSLAFPKRLHLEVEAMKWLSAGRTQF-GDPDFL 373

Query: 304 KID----PNSLLTSQHLSKVASKISLDRAASVGQGKGPGD------TIWMGAMDSKGFSV 353
            +D     + LL+ +  S++ + ISL +           D      T  +  +DS   +V
Sbjct: 374 PLDHLDVVSKLLSKEFASQIRNNISLSKTYPWEHYNPSYDLPISHGTTHVSTVDSNNLAV 433

Query: 354 SFIQSVYHEFGSTVVLPKTGILWQNR-------GVS--FTLEKDKLLTLQPGKKP-FHTL 403
           S   +V   FGS ++ P TG+++ ++       G S  F L       ++P K+P   + 
Sbjct: 434 SITSTVNLLFGSQLMDPVTGVVFNDQMDDFSIPGASNAFNLSPSPWNFIEPFKRPQSSSA 493

Query: 404 NLATARLNDGRVMIFGTRGGDGQPQTQSAIFYRHVGQGLNLQAAVSAPRWLYGRIAGDAE 463
                 +N    M  G  GG            + +    ++++ V++ R  +  +     
Sbjct: 494 PTILTDINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVASARPHHQLL----P 549

Query: 464 DTLKIESRFSEETVNYLKERGHDVEILPEFSEKVGHAGALVRHPNGVMEGAFDPRCDGSA 523
           D L +ES FS+     +K+ GH V  L +    +    A+ RH +    G  DPR  G A
Sbjct: 550 DILILESGFSKSVATRMKKYGHKVWRLKQHDTPLSQIQAVTRH-HSEYYGMSDPRKYGQA 608

Query: 524 SGF 526
           + +
Sbjct: 609 AAY 611


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 439 GQGLNLQAAVSAPRWLYGRIAGDAEDTLKIESRFSEETVNYLKE 482
           G+ L+L  A +A   L  RIAG  +D + ++    +E   YL+E
Sbjct: 244 GRNLDLSLATAAKLVLRRRIAGTLKDEVDLQKALPKEGSQYLRE 287


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 177 MGDILYQKELGTTLRRLAENGLNSFYKGELARTIAEDMATVGMPITESDLQNFTAIRKTP 236
           +G    +K  G + ++L    +  F KGE+   IA  +   G+ I E D+        +P
Sbjct: 465 IGQSAVRKAAGMS-QKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASP 523

Query: 237 LRLLLKQG 244
           +R+L + G
Sbjct: 524 IRMLQRMG 531


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 278  LVHATVEATKQAFEMRNDYITDPKYMKIDPNSLLTSQHLSKVASKISLDRAASVGQGKGP 337
            L+H +   + +     +D   D K  +     ++ +   ++  +   LDR+ S+G  +GP
Sbjct: 1635 LIHESFSRSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLDRSLSLGSRRGP 1694

Query: 338  GDTIWMGAMD 347
            G T    A D
Sbjct: 1695 GHTTEDDASD 1704


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 486 DVEILPEFSEKVGHAGALVRHPNGVMEGAFDPRCD 520
           D+  + +F++  GH   L+    G+  GAF    D
Sbjct: 932 DISCIAQFNDYEGHVSVLIATSTGIFLGAFGDSSD 966


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,750
Number of Sequences: 5004
Number of extensions: 98537
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 6
length of query: 526
length of database: 2,362,478
effective HSP length: 76
effective length of query: 450
effective length of database: 1,982,174
effective search space: 891978300
effective search space used: 891978300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)