Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002520-TA|BGIBMGA002520-PA|IPR003323|Ovarian tumour,
otubain, IPR001012|UBX, IPR007087|Zinc finger, C2H2-type
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0484 + 3471527-3471591,3471679-3471724,3472468-3472576,347... 173 1e-43
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 38 0.010
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 34 0.17
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 32 0.67
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 32 0.67
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 32 0.67
02_05_1242 - 35197944-35198118,35198276-35198332,35198780-351988... 31 0.89
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 31 0.89
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 30 2.1
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 30 2.1
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 29 4.7
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162 29 4.7
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 6.3
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 28 8.3
>02_01_0484 +
3471527-3471591,3471679-3471724,3472468-3472576,
3473023-3473114,3473196-3473258,3473346-3473464,
3473752-3473827,3473925-3473981
Length = 208
Score = 173 bits (422), Expect = 1e-43
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 10/206 (4%)
Query: 111 GILMKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASDRDTYNEAMLGKPNA 170
G+++++V+PSDNSCLF ++G+V+ + + + +RQ+IA VASD Y+E LGKPN
Sbjct: 3 GVVVRRVIPSDNSCLFNAVGYVMEHNRNKASE--LRQVIAAAVASDPAKYSEVFLGKPNE 60
Query: 171 EYCDWIQQPSSWGGAIEVAILSRFYGLEMAVVDTLNAIINRFGEDKNYGQRVFLLFDGVH 230
YC WI WGGAIE++ILS +YG E+A D + +G++KNY +R L++DG+H
Sbjct: 61 AYCAWILDSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKNYTERTMLIYDGLH 120
Query: 231 YDPLYLEQSDGGL----QTIFPAEDMEVYREAEQLA----HEAKSSRQFTDLNKFTLKCM 282
YD L + +G QTIFP + E LA + K R +TD FTL+C
Sbjct: 121 YDALAMSPFEGAPEEFDQTIFPVDHKWSIGPVEGLALNFVKDEKRKRSYTDTANFTLRCG 180
Query: 283 ICDKFLTGQAEAQKHAKETMHTNFGE 308
+C + GQ EA +HA+ T H NF E
Sbjct: 181 VCQIGVIGQKEAVEHAQATGHVNFQE 206
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 37.9 bits (84), Expect = 0.010
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 118 VPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASDRDTYNEAMLGK-PNAEYCDWI 176
V +D +C F ++G L G+ + H R +I + R + + + P +YCD +
Sbjct: 18 VSADGNCFFRAMGDQLEGNEEE--HMKYRAMIVQYIKEHRVDFEPFIEDEEPFEKYCDSM 75
Query: 177 QQPSSWGGAIEV--AILSRFYGLEMAVVDTLNAIINRFGEDKNYGQRVFLLF-DGVHYDP 233
+ +W G +E+ A + + + + ++++ I F D+ + L + G HY+
Sbjct: 76 LEDGTWAGHMELQAASILKRKNICIHMLNSPRWYIRNF-SDREATSMIHLSYHQGEHYNS 134
Query: 234 LYLEQS--DGGLQTIFPAEDMEVYREAEQLAHEAKSSRQFTDLNKF 277
+ L + G + D V + +AK ++ +D +K+
Sbjct: 135 VRLREDPCQGPAMPVIIKADANVASTSNNAQTKAKDLKKSSDRSKY 180
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 7 KIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSE 66
+I+ +G +++ + T+ +++ F+ + + G+PPK LD D SKT+ E
Sbjct: 382 QIRFVDGSRMVAHFNTSHTIADVRAFIDTTRPGEAGDYTLQAGFPPKPLD--DMSKTIEE 439
Query: 67 LGL 69
G+
Sbjct: 440 AGV 442
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 21 TSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEK 80
TS +TV L + +S S+ ++ G P A + S + + + G +
Sbjct: 850 TSVTTVDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRPQITNNSSVSNGTMTDISNG 909
Query: 81 AVTKINATQTETRPSQNGVE 100
+T IN+ Q E S N VE
Sbjct: 910 CLTSINSGQNEASDSHNSVE 929
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 8 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 67
IKS N ++L ++ +TVG LK +S IER + G + + +++KTL +
Sbjct: 355 IKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIER-GLRVGILLQGKNIQNDNKTLRQA 413
Query: 68 GLKTGETL 75
G+ G+ L
Sbjct: 414 GICRGKKL 421
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 278 TLKCMICDKFLTGQAEAQKHAKETMHTNFGE 308
+L+C C L EAQ HA+ T H NF E
Sbjct: 5 SLRCGDCGVLLRSVEEAQAHAEATNHANFSE 35
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 259 EQLAH-EAKSSRQFTDLNKFTLK--CMICDKFLTGQAEAQKHAKETMHTNF 306
E AH EA + F++ + L C C K Q E H K T HT F
Sbjct: 20 EAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDLHTKRTGHTEF 70
>02_05_1242 -
35197944-35198118,35198276-35198332,35198780-35198853,
35198954-35199028,35199295-35199349,35199574-35199647,
35200446-35200579,35200660-35200746,35200838-35200967
Length = 286
Score = 31.5 bits (68), Expect = 0.89
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 56 DTSDNSKTLSELGLKTGETLIVEEKAVTKINATQTETRPSQNGVESHETI-ESCRPGILM 114
DT D+ E+G + + V V KIN E HE + E R L+
Sbjct: 95 DTDDSFPMDEEVGKRFYPMVPVPH--VPKING---EIPSVDEATMDHERLTERLRLYELV 149
Query: 115 KKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASDRDTYNEAMLGKPNAEYCD 174
+ V D +C F ++ L S D H +RQ I ++ S+RD Y+ G Y D
Sbjct: 150 EHKVKGDGNCQFRALSDQLYQSPDH--HEFVRQQIMSQLKSNRDAYD----GYVPMAYDD 203
Query: 175 WIQQPSSWGGAIEV 188
++++ S GA+E+
Sbjct: 204 YLEKVSH--GAVEL 215
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 31.5 bits (68), Expect = 0.89
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 115 KKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASDRDTYNEAMLGKPNA---- 170
+K V S +S + F + S + ++ A + S R+ Y + G
Sbjct: 323 QKGVASADSRRQKLLEFFSSYSKSDGILAFLKYAAANWICSHREEYEPNIAGLGGGYTLE 382
Query: 171 EYCD-WIQQPSSWGGAIEVAILSRFYGLEMAVVDTLNAIINR-FGEDKNYGQRVFLLFDG 228
+C+ ++ QP I++ ++ G+ + V + N + D RV LL+ G
Sbjct: 383 AWCEIYLLQPREQTDHIQMTAVAAALGVPLRVENLHNGPAQDIYTADGVNIPRVTLLYTG 442
Query: 229 VHYDPLYLEQSDGG 242
VHYD LY GG
Sbjct: 443 VHYDILYPRHPSGG 456
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 8 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 67
++ +G + LT + + ++K F+ ++ YP K D TL EL
Sbjct: 269 VRIPDGPSLQIKLTKDDNLRKVKNFVDENRANGAGSYDLAMLYPRKVFTEQDMEATLHEL 328
Query: 68 GLKTGETL-IVEEKAVTKINATQTETRPSQ 96
G++T + L IV + Q+ + P +
Sbjct: 329 GIETRQALTIVPHHKTIRAAKRQSSSSPHE 358
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 7 KIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSE 66
+++ +G +++ TVG+++ F+ + + + G+PPK L +D ++T+ +
Sbjct: 272 QLRLADGTRMVARFNMHHTVGDIRSFIDASRPGATRPYQLQTGFPPKQL--ADPAQTVEQ 329
Query: 67 LGL 69
GL
Sbjct: 330 AGL 332
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 185 AIEVAILSRFYGLEMAVVDTLNAIINRFGEDKNYGQRVFLL 225
A+ V R GLE + V LN++IN FGED+ + +L
Sbjct: 556 ALNVVKAMRADGLEASTV-VLNSLINAFGEDRRIAEAFSVL 595
>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
Length = 692
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 161 NEAMLGKPNAEYCDWIQQPSSWGGAIEVAILSRFYGLEMAVVDTLNAIINR 211
NE + GKP CD + PS+ + +A++ G+ +A +I R
Sbjct: 243 NEYLCGKPLDTPCDKLASPSNMSTFMTIAVVLIVVGVILAAAGIATGVIGR 293
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 78 EEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCLFTSIGFVLNGSI 137
+ K VT N+ TR +++ + SH+ IE +PG+L+ + + + G +N
Sbjct: 183 QNKRVTNTNSLYL-TRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFG--VNSDN 239
Query: 138 DTSVH 142
D S+H
Sbjct: 240 DVSIH 244
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 13 GQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDN-SKTLSELGLKT 71
G+Q + ++ + TVGEL + D+ + V I Y DN KTL + ++
Sbjct: 193 GEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIWDYYGRTRHSLMDNLEKTLDDANIQM 252
Query: 72 GETLIVE 78
+ ++VE
Sbjct: 253 DQDILVE 259
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,518
Number of Sequences: 37544
Number of extensions: 314890
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 15
length of query: 309
length of database: 14,793,348
effective HSP length: 82
effective length of query: 227
effective length of database: 11,714,740
effective search space: 2659245980
effective search space used: 2659245980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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