Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002520-TA|BGIBMGA002520-PA|IPR003323|Ovarian tumour,
otubain, IPR001012|UBX, IPR007087|Zinc finger, C2H2-type
(309 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016684-10|AAB66205.1| 340|Caenorhabditis elegans Hypothetical... 35 0.085
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 3.2
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 3.2
AL117204-30|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 29 4.2
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 29 5.6
Z66494-7|CAA91261.1| 445|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 28 7.3
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 28 7.3
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 28 9.7
>AF016684-10|AAB66205.1| 340|Caenorhabditis elegans Hypothetical
protein F45C12.6 protein.
Length = 340
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 62 KTLSELGLKTGETLIVEEKAVTKINATQTETRPSQNG----VESHETIESCRPGILMKKV 117
+T +E + G E+ + +I T T S NG VES +++ +PG+ + KV
Sbjct: 41 RTSNEKQFQVGMDFYWNEEEIERITGTVTLCYSSGNGFGSWVESETSVDLSKPGLTIGKV 100
Query: 118 VPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASD 156
++ ++TS + L +H L ++ + SD
Sbjct: 101 FDTNFHVMYTSYRYSLTIHRSHCLHRLYEKMFSPSEQSD 139
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 QQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGE 73
+Q++ ++ + TV LK + +++ R +L K ++ DN+KT+++ G+ +
Sbjct: 32 KQIVVEMKDKETVSILKNRIEQETEVLTNRQVLLF----KGMELKDNNKTMTDCGINSDA 87
Query: 74 TLIVEEKAVTKINATQTET 92
+ + K T I T T
Sbjct: 88 KITMNVKMSTGIVTNPTTT 106
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 188 VAILSRFYGLEMAVVDTLNAIINRFGEDKNYGQRVFLLFDGVHYDP 233
+A+ R + + +++N ++ + +KN G V +LF G Y P
Sbjct: 247 IALEERIQNKKESFTESINNLVQKLQPEKNVGATVVVLFVGTEYIP 292
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 188 VAILSRFYGLEMAVVDTLNAIINRFGEDKNYGQRVFLLFDGVHYDP 233
+A+ R + + +++N ++ + +KN G V +LF G Y P
Sbjct: 292 IALEERIQNKKESFTESINNLVQKLQPEKNVGATVVVLFVGTEYIP 337
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 76 IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSC 124
I+E++ V+KI Q+ S+ + SC+PG + V D SC
Sbjct: 146 IIEKQRVSKILKVQSLPSSPALSTVSYASFSSCQPGPITSPVSYRDKSC 194
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 76 IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSC 124
I+E++ V+KI Q+ S+ + SC+PG + V D SC
Sbjct: 264 IIEKQRVSKILKVQSLPSSPALSTVSYASFSSCQPGPITSPVSYRDKSC 312
>AL117204-30|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 66 ELGLKTGETLIVEEKAVTKINATQTETRPSQNGV 99
ELG KTG+ +IV +K+ + + E PS++G+
Sbjct: 1055 ELGFKTGDVIIVTDKSEAEWWSGHREQDPSKSGL 1088
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 51 PPKALDTSDNSKTLSELGLKTGETLIVEEKAVTKINATQTETRPSQNGVESHET 104
P D + T ELGL+ E L++EE+ + + T ++N E H T
Sbjct: 675 PDMGEDDIELIDTPVELGLEATENLVIEEEIEALTSVDEVSTPSTENIQEVHTT 728
>Z66494-7|CAA91261.1| 445|Caenorhabditis elegans Hypothetical
protein C34C6.7 protein.
Length = 445
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 245 TIFPAEDMEVYREAEQLAHEAKSSRQFTDLNKFTL 279
++F A DM +Y E QL E + R+ + + T+
Sbjct: 46 SVFEAHDMAIYHEKVQLVEEEEDPRETAPIERSTV 80
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 278 TLKCMICDKFLTGQAEAQKHAKETMHTNFGE 308
+ KC C K L HA +T H NF E
Sbjct: 66 SFKCDDCGKLLANDDAIMFHASKTKHENFSE 96
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 10 SKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNI-LCGYPPKALDTSDNSKTLSELG 68
S N QQ ++ + + +VG + + D+ +E +N+ L P K +E
Sbjct: 93 SWNNQQPVQMSSIQQSVGSYNQQIPQLKDLQVEGMNVKLSSSPDKGEKDRVKKARQAEAA 152
Query: 69 LKTGETLIVEEKAVTKINATQTETRPSQNGVESHE 103
L EEK + T + R Q E E
Sbjct: 153 RMRYHRLSNEEKRELNLKRTLAQKRKRQREKEMEE 187
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 33 LSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 67
LS+++ + +E N +C +PPK+LD S L ++
Sbjct: 149 LSALTQLRLEN-NAICDFPPKSLDAVKASLVLLDV 182
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 226 FDGVHYDPLYLEQSDGGLQTIFPAEDMEVYREAEQLAHEAKSSRQFTDLNKFTLKCMICD 285
F+GV P Y++Q + G +T + +D + QL++ R T F KC IC
Sbjct: 491 FNGV---PNYVQQQENG-KTRYACKDCN--KTFGQLSNLKVHVRTHTGERPF--KCEICT 542
Query: 286 KFLTGQAEAQKH 297
K T A QKH
Sbjct: 543 KEFTQLAHLQKH 554
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,246,033
Number of Sequences: 27539
Number of extensions: 285206
Number of successful extensions: 795
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 16
length of query: 309
length of database: 12,573,161
effective HSP length: 81
effective length of query: 228
effective length of database: 10,342,502
effective search space: 2358090456
effective search space used: 2358090456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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