GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002519-TA|BGIBMGA002519-PA|IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR000859|CUB, IPR013032|EGF-like
region, IPR000742|EGF-like, type 3, IPR001881|EGF-like
calcium-binding, IPR006210|EGF, IPR013091|EGF calcium-binding
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   2.0  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    29   2.6  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 483 YLSATEEVKHLYSHARYGDNAYESRADCDWNIEAPRNHFVKLTFLTFELEREANCRYD 540
           Y SA   V+   S+AR+  N + S  D   +IE  R HF+K    TF L    +C  D
Sbjct: 196 YQSAVAAVRD--SYARW-TNEWRSTCDKLQDIEEERRHFLKSVMWTFTLLISRSCFND 250


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 209 ALYGPNGTITSPSFPELYPPLKNCLWEIVAPPQHRITLNFTHFDLEGNH 257
           ++Y   G   + S P L P   N L+  V P  H    N+TH  L G H
Sbjct: 72  SIYQSTGLSPTSSSPSLSPMTPN-LYPNVLPNVHPGVSNYTHHPLSGLH 119


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,334
Number of Sequences: 5004
Number of extensions: 132842
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 2
length of query: 642
length of database: 2,362,478
effective HSP length: 77
effective length of query: 565
effective length of database: 1,977,170
effective search space: 1117101050
effective search space used: 1117101050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)