GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002518-TA|BGIBMGA002518-PA|IPR000859|CUB,
IPR006025|Peptidase M, neutral zinc metallopeptidases, zinc-binding
site, IPR006026|Peptidase, metallopeptidases, IPR001506|Peptidase
M12A, astacin
         (647 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.27 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   2.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   3.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 105 KNGKLLPEEILDNSTEFNETKSDVHIANRSSVENISESESLEQDGVLVVNISTDNILNLD 164
           K G   P +   +  ++ + K  + +  ++ +  + E  +L  +      ++TD     +
Sbjct: 21  KQGFCQPTQRTMSKIQWRKPKPAM-VEEKTQLRYLEELNALRTELGASTKLATDTTSENE 79

Query: 165 ELYPFIQISNASRKQDEKTNKIQSNSREITGDSNNIQ---FKDIPENVTMAPAPTNGFLS 221
           E YP  Q+S A +K+ +K + + +    I G   N +    + +   +  A  PTN  L 
Sbjct: 80  ENYPHYQMSGAKQKK-KKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYPTNRSLF 138

Query: 222 NSDQDDE 228
             +Q +E
Sbjct: 139 IREQTEE 145


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 312 HSGSKEYRSSERKLEVPEHEFEDKFEVKPPPKNLTEFDPFKD 353
           HS   + R+   + +      ED  E+K   +++ EF+P  D
Sbjct: 174 HSSDTDGRALLGRFQTTSQNLEDDVEIKVQVESVIEFEPGLD 215


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 69  KRTKQPVQLSQDKKGYNDAALMSESLPEGVDKSLVLKNGKLLPEEILDNSTEFNETKSDV 128
           +R ++  +L  ++           S      K+++L N    PE I  N+TE  + K ++
Sbjct: 67  RRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKG--PEGIQINATELQKIKLEI 124

Query: 129 H--IANRSSVENIS-ESESLEQDGVLVV 153
           H  +  +S+   +  + + +  + V+V+
Sbjct: 125 HRDLPGKSTTTTVEVKRDIINPEDVIVI 152


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 69  KRTKQPVQLSQDKKGYNDAALMSESLPEGVDKSLVLKNGKLLPEEILDNSTEFNETKSDV 128
           +R ++  +L  ++           S      K+++L N    PE I  N+TE  + K ++
Sbjct: 67  RRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKG--PEGIQINATELQKIKLEI 124

Query: 129 H--IANRSSVENIS-ESESLEQDGVLVV 153
           H  +  +S+   +  + + +  + V+V+
Sbjct: 125 HRDLPGKSTTTTVEVKRDIINPEDVIVI 152


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,715
Number of Sequences: 429
Number of extensions: 8588
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 4
length of query: 647
length of database: 140,377
effective HSP length: 62
effective length of query: 585
effective length of database: 113,779
effective search space: 66560715
effective search space used: 66560715
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)