GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002517-TA|BGIBMGA002517-PA|undefined
         (112 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   6.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   6.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    20   6.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 13   SFEIEYNDDSDTTHFSKPNCGEEYLEDV 40
            S  +E ND      + KP   EE+  D+
Sbjct: 1001 SIRVETNDQHSLVVYWKPPAREEWNGDI 1028


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 20   DDSDTTHFSKPNCGEEYLEDVENGENLNKDFAFQKEKYE 58
            DD++   +   N G+  L+   NG   NKD     E  E
Sbjct: 2245 DDTNCAQYYLCNQGQLQLQVCPNGLFWNKDHCDWPENTE 2283


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 18  YNDDSDTTHFSKP 30
           YN D   TH+  P
Sbjct: 365 YNQDVSCTHYQNP 377


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 10  STKSFEIEYNDDSDTTHFSKPN 31
           S K   I++ DD+  TH    N
Sbjct: 261 SEKKSSIQHGDDAHKTHHLDKN 282


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,489
Number of Sequences: 317
Number of extensions: 1085
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 114,650
effective HSP length: 49
effective length of query: 63
effective length of database: 99,117
effective search space:  6244371
effective search space used:  6244371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)