GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002516-TA|BGIBMGA002516-PA|undefined
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988...    29   3.4  
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508     28   4.5  

>01_01_1222 +
           9877607-9877691,9879235-9879390,9880070-9880148,
           9881471-9881711,9881794-9881868,9881960-9882094,
           9882634-9882821,9882915-9882983,9883060-9883150,
           9883262-9883396,9883675-9883740,9883823-9883935,
           9884020-9884110
          Length = 507

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 118 VASYEGQELSATSWKDNKQVLLLSTYVGAEPADTITRYEKKLKAN 162
           V  ++GQE  A  +K++ ++L ++  + A   + I  +EK LK+N
Sbjct: 333 VNPFDGQE--AKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSN 375


>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
          Length = 654

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 80  GIYCLGTVQRNRLGKSCKLPEKREIMKSNVPRGTYHENVASYEGQELSATSWKDN 134
           G++     QR RL K     E+ EI+ +N   G   +N +  E +  +A   +DN
Sbjct: 312 GLFAYRRQQRIRLAKEKLAKEREEILNANNSSGRTAKNFSGRELRRATANFSRDN 366


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,959,861
Number of Sequences: 37544
Number of extensions: 242036
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)