GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002516-TA|BGIBMGA002516-PA|undefined
         (201 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    30   0.99 
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    30   0.99 
L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome regu...    28   4.0  
AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 105 MKSNVPRGTYHEN--VASYEGQELSATSWKDNKQVLLLSTYVGAEPADTITRYEKKLKAN 162
           +K+N+  G    +   A +EG ELS +SW DN   L ++ Y+    A T   +E K    
Sbjct: 295 LKNNMAEGRTQISRWTAEHEGLELSPSSW-DN---LTMTPYILDLKAKTFLTFEDKRSIK 350

Query: 163 VQVSCPRVINEYNVHMGGVDLMD 185
           ++    + ++   V +  VD+ D
Sbjct: 351 IKTDYAKKMDLGGVWLWSVDMDD 373


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 38  DLGAVLNTVTRL--LRPVPRHVN--HITYFDNFYTNIPL 72
           D G VL ++ +L  +R + RHV   H+ +FDN Y  +PL
Sbjct: 417 DRGPVLESIVQLFRIRKMWRHVKTEHLHFFDNSYRPVPL 455


>L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 3 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 40  GAVLNTVTRLLRPVPRHVNHITYFDNFYTNIPLLHYLTNEGIYCLGTVQRNRLGKSCKLP 99
           GA+   +T  +R  PR++      D + T+ P  H+ T    YCL     N+  K+ + P
Sbjct: 413 GAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIR-YCLEL--HNQAVKALRYP 469

Query: 100 EKREIMKSNVPRGTYHENVASYEGQELS 127
            K++I    + +    E       +EL+
Sbjct: 470 PKKKIAVETIEQAREREQQELEFAKELA 497


>AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical
           protein F56F11.4a protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 88  QRNRLGKSCKLPEKREIMKSNVPRGTYHENVAS 120
           Q + +G+ CK  +K++++  N P G Y  +VA+
Sbjct: 74  QGSHVGEVCKAMDKKKVLVKNHPDGKYIVDVAA 106


>AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical
           protein F56F11.4b protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 88  QRNRLGKSCKLPEKREIMKSNVPRGTYHENVAS 120
           Q + +G+ CK  +K++++  N P G Y  +VA+
Sbjct: 95  QGSHVGEVCKAMDKKKVLVKNHPDGKYIVDVAA 127


>Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical
           protein F20D1.3 protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)

Query: 8   CPLIIPSTTDCINFEIYSGAKDIDRLPGKPDLGAVL 43
           CPLI P  T C +  IY        LPG P  G  L
Sbjct: 303 CPLIEPRLTACHSGNIYVWGDFDQPLPGMPPNGTHL 338


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,232,959
Number of Sequences: 27539
Number of extensions: 221148
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 12,573,161
effective HSP length: 78
effective length of query: 123
effective length of database: 10,425,119
effective search space: 1282289637
effective search space used: 1282289637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)