GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002514-TA|BGIBMGA002514-PA|undefined
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    33   0.90 
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380...    31   2.8  
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603...    31   2.8  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    29   8.4  
01_04_0009 + 15052324-15052439,15052544-15052844                       29   8.4  

>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 97  DASETVSNGNTVSQPPKPIYEVTEQYPEPEYHMAK 131
           + S+TVS   T S PP P Y VT  Y  P Y   K
Sbjct: 604 ERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYPAEK 638


>06_01_0525 -
           3800578-3801018,3801395-3801504,3801608-3801683,
           3801757-3801909,3802088-3802159,3802242-3802322,
           3802936-3803001,3803117-3803182,3803277-3803327,
           3803429-3803512,3803988-3804088,3804188-3804329,
           3804820-3804917,3805194-3805263,3805409-3805477
          Length = 559

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 83  APNLSLSEKPIIVVDASETVSNGNTVSQPPKPIYEVTEQYPEPEYHMAKIETPIGFSKTK 142
           AP ++  +K + +    E        S PP P  E  EQ PEPE    K E P       
Sbjct: 292 APTVAQKDKVLAIEYKKEAEEEEKPASPPPAPEPE-PEQEPEPEPEPVKEEAPKEEPTDL 350

Query: 143 TSSNAPE---LQTLIREAAALQVASQYGISPISAPQNG 177
              N P     +   + A AL +     +  ++  QNG
Sbjct: 351 LGLNEPNPAAAEIEEKNALALAIVPIDDVPKVAPAQNG 388


>01_07_0081 -
           40959279-40959375,40959463-40959589,40960138-40960339,
           40962414-40963361
          Length = 457

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/30 (53%), Positives = 16/30 (53%)

Query: 97  DASETVSNGNTVSQPPKPIYEVTEQYPEPE 126
           DAS    N N VS  P P   VTE  PEPE
Sbjct: 7   DASPAPPNPNPVSDDPPPPPPVTETKPEPE 36


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 79  HTIPAPNLSLSEKPIIVVDASETVSNGNTVSQPPKPIYEVTEQYPEPEYHMAKIETPIGF 138
           H+   P++  +E  I  V  S    NG+ ++   + +    ++YP+P+Y    +   I  
Sbjct: 224 HSAVIPDIPYTELNIGDVPGSMQNGNGSCLTVQGEYLQGEYQEYPQPDYGSFDMANEIVL 283

Query: 139 SKTKTSSNAPELQTL---IREAAALQVAS 164
                ++ + EL+ L   I E++++QV S
Sbjct: 284 HDLPQNNQSYELEQLPQNICESSSMQVGS 312


>01_04_0009 + 15052324-15052439,15052544-15052844
          Length = 138

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 64  YRNSPHRAVSSTGAIHTIPAPNLSLSEKPIIVVDASETVSNGNTVSQPPKPIYEVTEQYP 123
           YR    R + S   +H   +P    S++ +     SE +S   T S P      VT   P
Sbjct: 10  YREHEWRRIGSGMPVHGKASPPTPSSDQQV-----SEEMSTPGTSSSPAGGAVAVTSPTP 64

Query: 124 EPEYHMAKIETPIGFSK 140
            P   +A + TP   SK
Sbjct: 65  SPSPSLAPVTTPNTNSK 81


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,423
Number of Sequences: 37544
Number of extensions: 689077
Number of successful extensions: 1287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 5
length of query: 626
length of database: 14,793,348
effective HSP length: 86
effective length of query: 540
effective length of database: 11,564,564
effective search space: 6244864560
effective search space used: 6244864560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)