GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002514-TA|BGIBMGA002514-PA|undefined
         (626 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.61 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   4.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   9.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   9.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 198 LINSGAEGIVIPP---NALYQPDPMFLQKLQSQI 228
           +   G + + +PP   ++L+QPDP FL    S+I
Sbjct: 53  IFEEGDDYVTLPPEFFDSLWQPDPYFLNAKVSEI 86


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 320 IAEASQPITTTIKYIADPNRDRLN 343
           +AEASQP +TT        R R N
Sbjct: 84  LAEASQPTSTTTSVTPSCRRQRYN 107


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 179 VIHQHIPVQPFNGIPTQQDLINSGAEGIVIPPNALYQPD 217
           V+  H   +P   + T+Q L+  G + +  PP   Y PD
Sbjct: 240 VVFHHDNARPHTSLVTRQKLLELGWDVLPHPP---YSPD 275


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 49  QLVAPAASQRVPYVVYRNSPHRAVSSTGAIHTIPAPNLSLSEKPIIVVDASET 101
           ++ A   +   P +VY  S  R      A + IPA  + L    ++ +D+  T
Sbjct: 229 KMYACCPNDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLTVLWLDSRST 281


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 84  PNLSLSEKPIIVVDASETVSNGNTVSQPPKP 114
           P L  +E   + +  SE +S+G ++S   KP
Sbjct: 524 PQLDSTELADLDISLSENLSSGLSISDSTKP 554


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,278
Number of Sequences: 429
Number of extensions: 7470
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 626
length of database: 140,377
effective HSP length: 62
effective length of query: 564
effective length of database: 113,779
effective search space: 64171356
effective search space used: 64171356
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)