GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002513-TA|BGIBMGA002513-PA|undefined
         (231 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 185 HLEYGPPPSAYGAPTAPAHYSHTAPALPTG 214
           H    P P     PT+P H S    A+  G
Sbjct: 246 HATKPPKPQTKTKPTSPYHVSDHKAAITVG 275


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 108 KSILYTLFQAVKAITGGVTILKGQLIKGGGAL 139
           K I   LF  +K    G++++KG   K GG +
Sbjct: 100 KRICSALFGKIKPTAIGLSLIKGFDKKQGGGI 131



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 133 IKGGGALASTLGKVIAVKGDAVSNLGKKI 161
           I G G   ST+ K+I +     SN   ++
Sbjct: 9   IVGSGNWGSTIAKIIGINAANFSNFEDRV 37


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 196 GAPTAPAHYSHTAPALPTGYAAHKYPAHLDGKEILN 231
           G P  P  +   AP     +  H   AH  G  + N
Sbjct: 272 GPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLEN 307


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 180 PPPTSHLEYGPPPSAYGAPTAPAHYSHTAPALPTGYAAHKY 220
           P   SH  +        A  +P  Y  TA  LP  Y  H++
Sbjct: 281 PSLASHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQH 321


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,295
Number of Sequences: 429
Number of extensions: 2955
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 231
length of database: 140,377
effective HSP length: 56
effective length of query: 175
effective length of database: 116,353
effective search space: 20361775
effective search space used: 20361775
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)