GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002512-TA|BGIBMGA002512-PA|undefined
         (50 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   3.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 35  TNQEGDEVPPKPPSQI 50
           T +  + +PP PP +I
Sbjct: 630 TQETEERLPPLPPKRI 645



 Score = 18.6 bits (36), Expect = 6.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 38  EGDEVPP 44
           EGDE PP
Sbjct: 756 EGDETPP 762


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544
Number of Sequences: 429
Number of extensions: 155
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 50
length of database: 140,377
effective HSP length: 30
effective length of query: 20
effective length of database: 127,507
effective search space:  2550140
effective search space used:  2550140
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.4 bits)
S2: 35 (18.2 bits)