Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002511-TA|BGIBMGA002511-PA|undefined
(80 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 27 0.31
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 0.95
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 24 2.9
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 24 2.9
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 24 2.9
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 23 3.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 23 3.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 23 3.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 23 3.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 23 3.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 23 3.8
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 22 8.9
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 0.31
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 15 CLKLDYRVWKRLEEKYAKCCIIREEIYYGVESFMVWVG 52
CLKL + W+ + EK I R++ Y+G F + VG
Sbjct: 121 CLKLILQYWQLVGEKQRCHIIARKQGYHGNTLFALSVG 158
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 0.95
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 7 LFTDKSRFCLK--LDYRVWKRLEEKYAKCCIIREEI 40
LF ++S+ LK L+Y+V K L E Y +R+++
Sbjct: 202 LFNNQSKSSLKINLEYKVIKHLLEHYPLALSVRQQV 237
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect = 2.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 8 FTDKSRFCLKLDYRVWKRLEEKYAKCCIIREEIYYGVES 46
F +S FC++ + EK++K I+R+ YG S
Sbjct: 648 FQSRSGFCVETGRFINALNNEKWSKQVILRKGEVYGARS 686
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 2.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 28 EKYAKCCIIREEIYYGVESFMVWVGASVCMARR---------SLCVIENGSLAVA 73
EK +K + EI G + W + R SLCV+ENGS+ A
Sbjct: 39 EKKSKRLYVANEIEEGYVAVFEWDNGKFSLVDRFTIDGHSPTSLCVLENGSVLTA 93
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 23.8 bits (49), Expect = 2.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 17 KLDYRVWKRLEEK 29
K DY +W+ LEEK
Sbjct: 339 KYDYELWENLEEK 351
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 42 YGVESFMVWVGASVCMARRSLCVIENGSLAVA 73
Y S VW G ++ +++ + E GS VA
Sbjct: 32 YSGNSESVWTGENITSIWKTILINETGSYCVA 63
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 42 YGVESFMVWVGASVCMARRSLCVIENGSLAVA 73
Y S VW G ++ +++ + E GS VA
Sbjct: 32 YSGNSESVWTGENITSIWKTILINETGSYCVA 63
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 23.4 bits (48), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 42 YGVESFMVWVGASVCMARRSLCVIENGSLAVA 73
Y S VW G ++ +++ + E GS VA
Sbjct: 4 YSGNSESVWTGENITSIWKTILINETGSYCVA 35
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 42 YGVESFMVWVGASVCMARRSLCVIENGSLAVA 73
Y S VW G ++ +++ + E GS VA
Sbjct: 32 YSGNSESVWTGENITSIWKTILINETGSYCVA 63
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 23.4 bits (48), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 36 IREEIYYGVESFMVWVGASVCMARRSLCVIENGSLAVA 73
+ + Y E+ +V VGA C+ +S NG+ AV+
Sbjct: 177 VDSDAYTNFEALIVQVGAKECIISQSGHESTNGNSAVS 214
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 23.4 bits (48), Expect = 3.8
Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 54 SVCMARRSLCVIENGSLAVARC 75
+VC R ++C+++N S+ +A C
Sbjct: 360 AVCTTRATICLLQNNSI-IAFC 380
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 22.2 bits (45), Expect = 8.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 5 ETLFTDKSRFCLKLDYRVWK 24
E L D SRF L DY V K
Sbjct: 227 EVLTPDSSRFWLASDYTVGK 246
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.138 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,304
Number of Sequences: 5004
Number of extensions: 12760
Number of successful extensions: 31
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 12
length of query: 80
length of database: 2,362,478
effective HSP length: 59
effective length of query: 21
effective length of database: 2,067,242
effective search space: 43412082
effective search space used: 43412082
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)
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