GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002511-TA|BGIBMGA002511-PA|undefined
         (80 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-8|CAB07360.1|  659|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z92830-8|CAB07360.1|  659|Caenorhabditis elegans Hypothetical
           protein F11A5.8 protein.
          Length = 659

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 23  WKRLEEKYAKC-CIIREEIYYGVESFMVWVGASVCMARRSLCVIENGSLAVARCGT 77
           WK  E   A C   +     +  E   +W+   +      L  IEN S  V +C T
Sbjct: 233 WKIHESDVATCSAAVLFLCIFPAEGDALWLRPLITFTTALLIFIENKSCGVLKCST 288


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.138    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,747
Number of Sequences: 27539
Number of extensions: 73166
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 1
length of query: 80
length of database: 12,573,161
effective HSP length: 60
effective length of query: 20
effective length of database: 10,920,821
effective search space: 218416420
effective search space used: 218416420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)