GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002510-TA|BGIBMGA002510-PA|undefined
         (320 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           30   0.020
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.0  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 163 QITPIHIKSPIHKKRTNVSILRSDAASSKWMRNTRPDSSTNAGRSSAKSFASLDTRNMGN 222
           ++ P H++SP  +   + S   +D+ SS  + + + D STN   +  +S   L T +  N
Sbjct: 80  RLAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQ-DLSTNG--APPRSTPPLSTPSNSN 136

Query: 223 SVLSASDRSKLLNGRIVTGRYRDSTKLEPLCSP 255
           +  S+   S L       G+   ST  + L SP
Sbjct: 137 ATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 24  NTAEATKTLAEEWERIERTLYDEEGPKS 51
           N A++   L E+W R+E  L + +  KS
Sbjct: 280 NLAKSWPQLIEKWSRVEMALDNWKNDKS 307


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,953
Number of Sequences: 317
Number of extensions: 2654
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 320
length of database: 114,650
effective HSP length: 57
effective length of query: 263
effective length of database: 96,581
effective search space: 25400803
effective search space used: 25400803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)