GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002509-TA|BGIBMGA002509-PA|IPR004934|Tropomodulin,
IPR003590|Leucine-rich repeat, ribonuclease inhibitor subtype
         (405 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.24 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   1.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   9.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 276  LRRGLDPVSERPSRKQARTEPRTVTNPISPR--DAMPSVVYSRESLHPN 322
            L RGL  + + PSR+     P  VT P  P+    + +   S E +HP+
Sbjct: 987  LNRGLGLIPDNPSREDCTKPPEPVT-PAPPQVTTGVDTGASSTEHMHPD 1034


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 226 TNGVEAANRHVEIRTGDQVDRFVRAQPPDINP 257
           + G +A   H  + +  ++  F+   PP++NP
Sbjct: 33  SQGCKACGYHSPLESNHKLVTFILKNPPNLNP 64


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/62 (27%), Positives = 24/62 (38%)

Query: 134 NIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFSMTPPSAEAVTPTNDTKSITENVEK 193
           NI+R C  LKR     N R P        +D+ + S T P+        D     + +  
Sbjct: 244 NIERLCNGLKRVVKLSNWREPLPEAYFPKLDSLVASRTWPARPVNQVPRDLNREVDQIRL 303

Query: 194 SL 195
           SL
Sbjct: 304 SL 305


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 90  SQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHL 131
           + + G K    I +L+E +  L  + L + Y + R R   HL
Sbjct: 95  TSINGTKFIEFINKLIEFDVKLQNVSLIINYENQRTRSRIHL 136


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 165 NSLFSMTPPSAEAVTPT 181
           NS  S  PP  EA +PT
Sbjct: 40  NSAASPAPPEEEAASPT 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,418
Number of Sequences: 317
Number of extensions: 3544
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 405
length of database: 114,650
effective HSP length: 58
effective length of query: 347
effective length of database: 96,264
effective search space: 33403608
effective search space used: 33403608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)