Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002509-TA|BGIBMGA002509-PA|IPR004934|Tropomodulin,
IPR003590|Leucine-rich repeat, ribonuclease inhibitor subtype
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 31 0.39
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.67
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 30 0.67
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 1.2
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 4.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 6.3
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 8.3
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 8.3
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 255 INPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPIS 304
++P P +S A+ NS P +R+ + +PS+KQ T + +P++
Sbjct: 286 MSPTPEVVSPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLT 335
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.67
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 258 NPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQARTEPRTVT-NPISPRDAMPSVVYSR 316
+P +RA SV Q + + E + + R+V+ NP+ P SV+ S+
Sbjct: 732 SPAPSTRARGQSVSGQQRPSSSMSLYGEYNKSQPQLSMQRSVSPNPLGPNRRSSSVLQSQ 791
Query: 317 ESLHPNSSSPVRSKRSDANLMCEISHPRWDLGPRSDRSPYPHSARFAVGP 366
+S N+S+ S + E+ H + RS R S A P
Sbjct: 792 KSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSP 841
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 29.9 bits (64), Expect = 0.67
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 2 YFQNISDEKFEKLFEALKSN--SHV-EVLSLVNVGLTDRTAGALADALRHNTALRVLSVE 58
Y NI D+ LFE +K N SHV S V G+ R A A+ D ++ + + V+S +
Sbjct: 93 YEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLA-AMFDVMQISDIIGVVSAD 151
Query: 59 TNFISP 64
T F+ P
Sbjct: 152 T-FVRP 156
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 276 LRRGLDPVSERPSRKQARTEPRTVTNPISPR--DAMPSVVYS 315
L GLDP+ P R A T P VT P PR ++ ++ YS
Sbjct: 383 LAHGLDPILA-PGRHSAETSPDPVTIPPQPRWITSLAAIPYS 423
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/69 (24%), Positives = 27/69 (39%)
Query: 257 PNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMPSVVYSR 316
P PH + A H SV ++ DP + S + P P + P+ S
Sbjct: 37 PYPHVQNPAFHGSVDVPQVAQKAFDPQAATVSESANVSRPTPAPVPPAGNTNTPTTSNSN 96
Query: 317 ESLHPNSSS 325
++L N +S
Sbjct: 97 QNLENNVTS 105
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 6.3
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 253 PDINPNPHSLSRASHNSVHPQ---PQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAM 309
P +NP PHS S + P+ P ++P + + A + P V +SP+ A
Sbjct: 431 PKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSPKVA- 489
Query: 310 PSVVYSRESLHPNSSSPV 327
P R S P++ + V
Sbjct: 490 PKFQGGRSSTAPSTPNKV 507
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 8.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 276 LRRGLDPVSERPSRKQARTEPRTVTNPISPRD-AMPSVVYSRESLHPNSSSPVRSKRSDA 334
L++G +E +++ P TV P SPRD A SVV +E ++ +SS + K ++
Sbjct: 69 LKKGSYKENELLAKRNQNLVP-TVIIPASPRDNASKSVVSKKEVVNLSSSVALSGKPAN- 126
Query: 335 NLMCEISHPRWDLGPRSDRSPY 356
N + H + + D P+
Sbjct: 127 NSKLDPLHRLLQIVAQEDALPF 148
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 278 RGLDPVSERPSRKQARTEPRTVTNPISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANL- 336
R L+P+ + K+ + + TVTNP++ VY S + + ++S+ DA L
Sbjct: 593 RELNPLEPFENMKE-QADDGTVTNPLNVSSDKAMSVYLLSSENAKDTGDIKSESIDAVLP 651
Query: 337 MCEISHPRWDLGPRSDRSPYPHSARFAV 364
E S P + + P+ A+
Sbjct: 652 TLETSSPSLSIPTDFQKEASPNKGAAAL 679
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 8.3
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 6 ISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPP 65
I +E E L +L+ N +V ++ TD L+ A H T L+ + V T+
Sbjct: 386 IQEESTEPL-TSLQRNDCRDVGLILLALATDTENVTLSTAKAHLTRLKTI-VSTD----A 439
Query: 66 ALVQLVRALLHTN---------TVEEFRASNQRSQVLGNKI-EMEITQLVEQNPTLLRLG 115
+LV+L+ L+ T+ + +N S +L + E + + VE N LLRL
Sbjct: 440 SLVELIEVLIFNEELRIQTLLPTMLSYMVNNYESVLLMEDVYETYLAEQVE-NDRLLRLL 498
Query: 116 LHLEYSDAR 124
L LE+ D R
Sbjct: 499 LKLEFLDDR 507
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,006
Number of Sequences: 5004
Number of extensions: 72403
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 10
length of query: 405
length of database: 2,362,478
effective HSP length: 74
effective length of query: 331
effective length of database: 1,992,182
effective search space: 659412242
effective search space used: 659412242
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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