Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002509-TA|BGIBMGA002509-PA|IPR004934|Tropomodulin,
IPR003590|Leucine-rich repeat, ribonuclease inhibitor subtype
(405 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 120 2e-27
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 120 2e-27
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 77 3e-14
U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin pr... 74 2e-13
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 38 0.013
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 36 0.068
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 36 0.068
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 1.1
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 31 1.9
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 30 2.6
Z74030-3|CAA98437.2| 395|Caenorhabditis elegans Hypothetical pr... 30 3.4
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80448-4|AAB37818.1| 293|Caenorhabditis elegans Hypothetical pr... 29 5.9
U80448-3|AAO12418.1| 170|Caenorhabditis elegans Hypothetical pr... 29 5.9
U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical pr... 29 5.9
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 29 5.9
AF040644-3|AAP82651.1| 336|Caenorhabditis elegans Gamma-tubulin... 29 5.9
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 29 5.9
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 29 5.9
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 5.9
Z50857-5|CAJ43436.1| 719|Caenorhabditis elegans Hypothetical pr... 29 7.8
Z50857-4|CAC42283.1| 694|Caenorhabditis elegans Hypothetical pr... 29 7.8
Z50857-3|CAC42284.1| 753|Caenorhabditis elegans Hypothetical pr... 29 7.8
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 7.8
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 7.8
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 29 7.8
AF136239-1|AAD34463.1| 694|Caenorhabditis elegans DAF-12 A2 pro... 29 7.8
AF136238-1|AAD34462.1| 753|Caenorhabditis elegans DAF-12 A1 pro... 29 7.8
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 7.8
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 7.8
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 7.8
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 7.8
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 7.8
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 7.8
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 120 bits (289), Expect = 2e-27
Identities = 54/134 (40%), Positives = 89/134 (66%)
Query: 4 QNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFIS 63
+ +S E+ L EA ++ H+E SL N ++D A L + + + +LRVL+VE+NF++
Sbjct: 256 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 315
Query: 64 PPALVQLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDA 123
P L +L+R+ L T ++ EF+A NQR VLGN++EM++ +E+N +LLR+G+ +A
Sbjct: 316 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 375
Query: 124 RHRVASHLQRNIDR 137
RHRV+ L+RN +R
Sbjct: 376 RHRVSEALERNYER 389
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 120 bits (289), Expect = 2e-27
Identities = 54/134 (40%), Positives = 89/134 (66%)
Query: 4 QNISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFIS 63
+ +S E+ L EA ++ H+E SL N ++D A L + + + +LRVL+VE+NF++
Sbjct: 247 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 306
Query: 64 PPALVQLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDA 123
P L +L+R+ L T ++ EF+A NQR VLGN++EM++ +E+N +LLR+G+ +A
Sbjct: 307 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 366
Query: 124 RHRVASHLQRNIDR 137
RHRV+ L+RN +R
Sbjct: 367 RHRVSEALERNYER 380
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 76.6 bits (180), Expect = 3e-14
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 7/185 (3%)
Query: 12 EKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALVQLV 71
++L EAL N H E +SL N+GL D L + N A++ +++ETN++S +L
Sbjct: 118 KRLLEALAYNEHCERISLANMGLYDHDINVLVTVIEMNQAIKKVNLETNYLSGDFFSKLF 177
Query: 72 RALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHL 131
+A L +VEE +A NQ + E EI + +N L ++ ++ + RH+V +
Sbjct: 178 KAALVNESVEEIKAVNQ-GVSFSTQSEKEIIDAIVKNHGLTKISINFRLPEGRHKVENAT 236
Query: 132 QRNIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFSMTPPSAEAVTPTNDTKSITENV 191
RN + +KR A+ RL + N + + P + P I V
Sbjct: 237 LRN--GELKRVKRREAAQKARLEAEEL----AKNPVPKLAPEPKKEPEPKKMAPKIPPAV 290
Query: 192 EKSLV 196
KSLV
Sbjct: 291 PKSLV 295
Score = 31.1 bits (67), Expect = 1.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 6 ISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAG--ALADALRHNTALRVLSVETNFIS 63
+S + F KLF+A N VE + VN G++ T + DA+ N L +S+ NF
Sbjct: 168 LSGDFFSKLFKAALVNESVEEIKAVNQGVSFSTQSEKEIIDAIVKNHGLTKISI--NFRL 225
Query: 64 PPALVQLVRALLHTNTVEEFR 84
P ++ A L ++ +
Sbjct: 226 PEGRHKVENATLRNGELKRVK 246
>U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin
protein 2, isoform a protein.
Length = 308
Score = 74.1 bits (174), Expect = 2e-13
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 12 EKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALVQLV 71
++L EAL N H E +SL N+GL D L + N A++ +++ETN++S +L
Sbjct: 118 KRLLEALAYNEHCERISLANMGLYDHDINVLVTVIEMNQAIKKVNLETNYLSGDFFSKLF 177
Query: 72 RALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHL 131
+A L +VEE +A NQ + E EI + +N L ++ ++ + RH+V +
Sbjct: 178 KAALVNESVEEIKAVNQ-GVSFSTQSEKEIIDAIVKNHGLTKISINFRLPEGRHKVENAT 236
Query: 132 QRNIDRNCRVLKRASASLNLRL 153
RN + +KR A+ RL
Sbjct: 237 LRN--GELKRVKRREAAQKARL 256
Score = 31.1 bits (67), Expect = 1.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 6 ISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAG--ALADALRHNTALRVLSVETNFIS 63
+S + F KLF+A N VE + VN G++ T + DA+ N L +S+ NF
Sbjct: 168 LSGDFFSKLFKAALVNESVEEIKAVNQGVSFSTQSEKEIIDAIVKNHGLTKISI--NFRL 225
Query: 64 PPALVQLVRALLHTNTVEEFR 84
P ++ A L ++ +
Sbjct: 226 PEGRHKVENATLRNGELKRVK 246
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 5 NISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISP 64
N+ E +L AL SNSH+ L L N G+ A LA+ + N AL + + N I+
Sbjct: 389 NLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIAL 448
Query: 65 PALVQLVRAL 74
L+ L A+
Sbjct: 449 AGLLALHSAM 458
Score = 35.5 bits (78), Expect = 0.068
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 14 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE-----TNFISPPALV 68
+++ + SNS +++L L N + D + D LRH A+ S+ N ++ ++
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVTGASMD 368
Query: 69 QLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGL 116
L AL+ +E N LG + + + N L RLGL
Sbjct: 369 SLAEALIENTKIETLNIGNNN---LGVEGIARLKPALASNSHLHRLGL 413
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 5 NISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISP 64
N+ E +L AL SNSH+ L L N G+ A LA+ + N AL + + N I+
Sbjct: 389 NLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIAL 448
Query: 65 PALVQLVRAL 74
L+ L A+
Sbjct: 449 AGLLALHSAM 458
Score = 35.5 bits (78), Expect = 0.068
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 14 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE-----TNFISPPALV 68
+++ + SNS +++L L N + D + D LRH A+ S+ N ++ ++
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVTGASMD 368
Query: 69 QLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGL 116
L AL+ +E N LG + + + N L RLGL
Sbjct: 369 SLAEALIENTKIETLNIGNNN---LGVEGIARLKPALASNSHLHRLGL 413
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 5 NISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISP 64
N+ E +L AL SNSH+ L L N G+ A LA+ + N AL + + N I+
Sbjct: 389 NLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIAL 448
Query: 65 PALVQLVRAL 74
L+ L A+
Sbjct: 449 AGLLALHSAM 458
Score = 35.5 bits (78), Expect = 0.068
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 14 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE-----TNFISPPALV 68
+++ + SNS +++L L N + D + D LRH A+ S+ N ++ ++
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVTGASMD 368
Query: 69 QLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGL 116
L AL+ +E N LG + + + N L RLGL
Sbjct: 369 SLAEALIENTKIETLNIGNNN---LGVEGIARLKPALASNSHLHRLGL 413
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 5 NISDEKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISP 64
N+ E +L AL SNSH+ L L N G+ A LA+ + N AL + + N I+
Sbjct: 389 NLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIAL 448
Query: 65 PALVQLVRAL 74
L+ L A+
Sbjct: 449 AGLLALHSAM 458
Score = 35.5 bits (78), Expect = 0.068
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 14 LFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVE-----TNFISPPALV 68
+++ + SNS +++L L N + D + D LRH A+ S+ N ++ ++
Sbjct: 309 IYQLITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVTGASMD 368
Query: 69 QLVRALLHTNTVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGL 116
L AL+ +E N LG + + + N L RLGL
Sbjct: 369 SLAEALIENTKIETLNIGNNN---LGVEGIARLKPALASNSHLHRLGL 413
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 35.5 bits (78), Expect = 0.068
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 24 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALVQLVRALLHTNTVE 81
+E + L G+ D ALA+A R N LR++ + NF P +Q+ L +E
Sbjct: 193 LEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAIQISEVLSDLQFIE 250
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 35.5 bits (78), Expect = 0.068
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 24 VEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPPALVQLVRALLHTNTVE 81
+E + L G+ D ALA+A R N LR++ + NF P +Q+ L +E
Sbjct: 230 LEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAIQISEVLSDLQFIE 287
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 251 QPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPISP 305
+P P P + V P +R ++P ++RP+ ++A T+ T T +P
Sbjct: 234 EPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAP 288
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 30.7 bits (66), Expect = 1.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 250 AQPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDA 308
A PPD+ +P LS+ PQ QL + RP+ K R P T P++ R A
Sbjct: 191 AHPPDLERHP--LSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPP---TEPVAARTA 244
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 9 EKFEKLFEALKSNSHVEVLSLVNVGLTDRTAGALADALRHNTALRVLSVETNFISPP 65
E+ EKL K+ H EVL+ + +GLTDR + T++RV + S P
Sbjct: 464 EEAEKLLFYFKT--HKEVLNYLGIGLTDRLWKHIQKLPSFETSIRVFKKQDEISSKP 518
>Z74030-3|CAA98437.2| 395|Caenorhabditis elegans Hypothetical
protein D1054.5 protein.
Length = 395
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 228 GVEAANRHVEIRTGDQVDRFVRAQPPDINPNPHSLSRASHNSVHPQ 273
G +A +VEIR GD DR P P P S +R + VHP+
Sbjct: 210 GSSSAQCNVEIRLGD--DRTPPPPPNRAPPAPLSFTRCHNTIVHPE 253
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 TVEEFRASNQRSQVLGNKIEMEITQLVEQNPTLLRLGLHLEYSDARHRVASHLQ--RNID 136
T++E +A NQ+ Q++ ++ +++E+N LR G+ +DA ++ + + +N
Sbjct: 558 TIQEVKADNQKVQLMLVEVRQHQEKILEEN-VRLRKGM----ADALAKIEEYKRSWQNSQ 612
Query: 137 RNCRVLKRASASLNLRLPR 155
C L+R SA+ +L +
Sbjct: 613 ETCERLERESATKEDKLDK 631
>U80448-4|AAB37818.1| 293|Caenorhabditis elegans Hypothetical
protein F59A3.6 protein.
Length = 293
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 288 SRKQARTEPRTVTNPISPRDAMPSVVYSRESLHPNSSSPVRSK 330
SR+ + + + + +P+ R P+ ES+ P +SS +++K
Sbjct: 189 SRQNHKIDAQAILSPVITRQVKPTTKTQSESISPKTSSALKAK 231
>U80448-3|AAO12418.1| 170|Caenorhabditis elegans Hypothetical
protein F59A3.5 protein.
Length = 170
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 288 SRKQARTEPRTVTNPISPRDAMPSVVYSRESLHPNSSSPVRSK 330
SR+ + + + + +P+ R P+ ES+ P +SS +++K
Sbjct: 66 SRQNHKIDAQAILSPVITRQVKPTTKTQSESISPKTSSALKAK 108
>U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical
protein F56F10.2 protein.
Length = 377
Score = 29.1 bits (62), Expect = 5.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 33 GLTDRTAGALADALRHNTALRVLSVETNFISPPALVQLVRALLHTNT 79
G+TD T + DA+ + + + + + T F+S A+ Q+V++ T+T
Sbjct: 285 GVTDDTLIRINDAILNGSPVETIDLGTCFLSSEAVSQIVQSWEQTST 331
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 131 LQRNIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFS----MTPPSAEAVTPTNDTKS 186
++R + N R+ ++N +P RVQP++ N LF+ TPP+ T + +S
Sbjct: 173 MERQLAGNMAQRPRSPYTIN-GIPTTRVQPISASNQLFTASNGFTPPNPHLRTTSRREES 231
Query: 187 ITENV 191
+ +V
Sbjct: 232 PSSSV 236
>AF040644-3|AAP82651.1| 336|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform c protein.
Length = 336
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 131 LQRNIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFS----MTPPSAEAVTPTNDTKS 186
++R + N R+ ++N +P RVQP++ N LF+ TPP+ T + +S
Sbjct: 173 MERQLAGNMAQRPRSPYTIN-GIPTTRVQPISASNQLFTASNGFTPPNPHLRTTSRREES 231
Query: 187 ITENV 191
+ +V
Sbjct: 232 PSSSV 236
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 131 LQRNIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFS----MTPPSAEAVTPTNDTKS 186
++R + N R+ ++N +P RVQP++ N LF+ TPP+ T + +S
Sbjct: 173 MERQLAGNMAQRPRSPYTIN-GIPTTRVQPISASNQLFTASNGFTPPNPHLRTTSRREES 231
Query: 187 ITENV 191
+ +V
Sbjct: 232 PSSSV 236
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 131 LQRNIDRNCRVLKRASASLNLRLPRARVQPVAIDNSLFS----MTPPSAEAVTPTNDTKS 186
++R + N R+ ++N +P RVQP++ N LF+ TPP+ T + +S
Sbjct: 173 MERQLAGNMAQRPRSPYTIN-GIPTTRVQPISASNQLFTASNGFTPPNPHLRTTSRREES 231
Query: 187 ITENV 191
+ +V
Sbjct: 232 PSSSV 236
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.1 bits (62), Expect = 5.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 251 QPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQAR---TEPRTVTNPISPRD 307
Q P P S AS + P+ DP+ PS+K+ + EP T T+ PR
Sbjct: 340 QTPRSRGRPRIHSSASKKTEKPETPRAESPDPLPPPPSKKRPKEPSQEPSTNTSSKRPRT 399
Query: 308 A--MPSVVYSRESLHPNS 323
+ +P + R+ P+S
Sbjct: 400 STVVPMITRRRKEGTPHS 417
>Z50857-5|CAJ43436.1| 719|Caenorhabditis elegans Hypothetical
protein F11A1.3d protein.
Length = 719
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 252 PPDINPNPHSLSRASHNSVHP-QPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMP 310
P N PH +++P QPQ ++P+ + P + ISP A P
Sbjct: 186 PQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQP 245
Query: 311 SVVYSRESLHPNSSSPVRS 329
+ S + S P RS
Sbjct: 246 YPLTSPVGSSASDSPPNRS 264
>Z50857-4|CAC42283.1| 694|Caenorhabditis elegans Hypothetical
protein F11A1.3b protein.
Length = 694
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 252 PPDINPNPHSLSRASHNSVHP-QPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMP 310
P N PH +++P QPQ ++P+ + P + ISP A P
Sbjct: 161 PQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQP 220
Query: 311 SVVYSRESLHPNSSSPVRS 329
+ S + S P RS
Sbjct: 221 YPLTSPVGSSASDSPPNRS 239
>Z50857-3|CAC42284.1| 753|Caenorhabditis elegans Hypothetical
protein F11A1.3a protein.
Length = 753
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 252 PPDINPNPHSLSRASHNSVHP-QPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMP 310
P N PH +++P QPQ ++P+ + P + ISP A P
Sbjct: 220 PQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQP 279
Query: 311 SVVYSRESLHPNSSSPVRS 329
+ S + S P RS
Sbjct: 280 YPLTSPVGSSASDSPPNRS 298
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 7.8
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 272 PQPQLRRGLDPVSERPSRKQARTEPRTVTN------PISPRDAMPSVVYSRESLHPNSSS 325
P P L VS + + TE T P R+A P+ ES P S S
Sbjct: 2290 PSPHLEDVTPKVSHQEHPYEHVTETTTTVTRDYYEQPEDHREASPAPSSHVESERPISES 2349
Query: 326 PVRSKRSDANLMCEISHP---RWDLGPRSDRSPYPHSAR 361
P S+R +++ E + +D P++D+S S R
Sbjct: 2350 PAVSEREPSHIATETTTTVTREYDQEPKADQSSARESVR 2388
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 7.8
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 272 PQPQLRRGLDPVSERPSRKQARTEPRTVTN------PISPRDAMPSVVYSRESLHPNSSS 325
P P L VS + + TE T P R+A P+ ES P S S
Sbjct: 2290 PSPHLEDVTPKVSHQEHPYEHVTETTTTVTRDYYEQPEDHREASPAPSSHVESERPISES 2349
Query: 326 PVRSKRSDANLMCEISHP---RWDLGPRSDRSPYPHSAR 361
P S+R +++ E + +D P++D+S S R
Sbjct: 2350 PAVSEREPSHIATETTTTVTREYDQEPKADQSSARESVR 2388
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 28.7 bits (61), Expect = 7.8
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 251 QPPDINPNPHSLSRASH-NSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDA- 308
QPP + P SRA+ NSV P + + P + T P T+T +P A
Sbjct: 1270 QPPPLLPRS---SRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTTPSSAG 1326
Query: 309 -MPSVVYSR----ESLHPNSSSPVRSKRSDAN 335
P ++ R + + P + SP+ R +++
Sbjct: 1327 GPPPKLHPRRMTQQPMSPLAKSPLTPSRDNSS 1358
>AF136239-1|AAD34463.1| 694|Caenorhabditis elegans DAF-12 A2
protein.
Length = 694
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 252 PPDINPNPHSLSRASHNSVHP-QPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMP 310
P N PH +++P QPQ ++P+ + P + ISP A P
Sbjct: 161 PQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQP 220
Query: 311 SVVYSRESLHPNSSSPVRS 329
+ S + S P RS
Sbjct: 221 YPLTSPVGSSASDSPPNRS 239
>AF136238-1|AAD34462.1| 753|Caenorhabditis elegans DAF-12 A1
protein.
Length = 753
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 252 PPDINPNPHSLSRASHNSVHP-QPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMP 310
P N PH +++P QPQ ++P+ + P + ISP A P
Sbjct: 220 PQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISPPGAQP 279
Query: 311 SVVYSRESLHPNSSSPVRS 329
+ S + S P RS
Sbjct: 280 YPLTSPVGSSASDSPPNRS 298
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 28.7 bits (61), Expect = 7.8
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 280 LDPVSERPSRKQARTEPRTVTNPISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCE 339
+D S+ Q P+++ NP A +++S SS VR K+SD N + E
Sbjct: 314 MDQQSKSIDLNQTTWAPQSINNPGYLSTASSPAALNQDSSASEKSSIVRDKKSDENCLDE 373
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 7.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 250 AQPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQART-EPRTVTNPISPRDA 308
A P D+ P P S ++ S+ P + + + P+ A T P P +
Sbjct: 376 AAPSDVPPTPKSNGHIANGSIPGTPSVAQ--ESAKATPAATPAATATPAATATPAATGTP 433
Query: 309 MPSVVYSRESLHPNSSSPVRSKRSDANLMCEI-SHPRWDLGPRSDRSP 355
++ E S V + +++NL P+ PR+ R+P
Sbjct: 434 KADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTP 481
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 7.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 250 AQPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQART-EPRTVTNPISPRDA 308
A P D+ P P S ++ S+ P + + + P+ A T P P +
Sbjct: 326 AAPSDVPPTPKSNGHIANGSIPGTPSVAQ--ESAKATPAATPAATATPAATATPAATGTP 383
Query: 309 MPSVVYSRESLHPNSSSPVRSKRSDANLMCEI-SHPRWDLGPRSDRSP 355
++ E S V + +++NL P+ PR+ R+P
Sbjct: 384 KADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTP 431
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 28.7 bits (61), Expect = 7.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 250 AQPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQART-EPRTVTNPISPRDA 308
A P D+ P P S ++ S+ P + + + P+ A T P P +
Sbjct: 376 AAPSDVPPTPKSNGHIANGSIPGTPSVAQ--ESAKATPAATPAATATPAATATPAATGTP 433
Query: 309 MPSVVYSRESLHPNSSSPVRSKRSDANLMCEI-SHPRWDLGPRSDRSP 355
++ E S V + +++NL P+ PR+ R+P
Sbjct: 434 KADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTP 481
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 7.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 250 AQPPDINPNPHSLSRASHNSVHPQPQLRRGLDPVSERPSRKQART-EPRTVTNPISPRDA 308
A P D+ P P S ++ S+ P + + + P+ A T P P +
Sbjct: 376 AAPSDVPPTPKSNGHIANGSIPGTPSVAQ--ESAKATPAATPAATATPAATATPAATGTP 433
Query: 309 MPSVVYSRESLHPNSSSPVRSKRSDANLMCEI-SHPRWDLGPRSDRSP 355
++ E S V + +++NL P+ PR+ R+P
Sbjct: 434 KADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTP 481
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 28.7 bits (61), Expect = 7.8
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 251 QPPDINPNPHSLSRASH-NSVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDA- 308
QPP + P SRA+ NSV P + + P + T P T+T +P A
Sbjct: 1270 QPPPLLPRS---SRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTTPSSAG 1326
Query: 309 -MPSVVYSR----ESLHPNSSSPVRSKRSDAN 335
P ++ R + + P + SP+ R +++
Sbjct: 1327 GPPPKLHPRRMTQQPMSPLAKSPLTPSRDNSS 1358
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,812
Number of Sequences: 27539
Number of extensions: 389912
Number of successful extensions: 1346
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 49
length of query: 405
length of database: 12,573,161
effective HSP length: 83
effective length of query: 322
effective length of database: 10,287,424
effective search space: 3312550528
effective search space used: 3312550528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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