GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002509-TA|BGIBMGA002509-PA|IPR004934|Tropomodulin,
IPR003590|Leucine-rich repeat, ribonuclease inhibitor subtype
         (405 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.29 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.7  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   6.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   6.2  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   6.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 154 PRARVQPVAIDNSLFSMTPPSAEAVTPTNDTKSITENVEKS 194
           P+ R    A   SL     PS++AV+ T+ T ++T+N EKS
Sbjct: 336 PKYRAALFAKFPSLACAAEPSSDAVSTTSGTTTVTDN-EKS 375


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 387 FRYNKHHYSSPHNNYTK 403
           + YN ++Y   +NNY K
Sbjct: 322 YNYNNNNYKYNYNNYNK 338


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 272 PQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMPSVV--YSRESLHPNSSSPVRS 329
           P P+LRR  +P +E  + +          +P   R+A P      +R    P    P   
Sbjct: 167 PHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPR 226

Query: 330 KRSDANLMCEISHPRWDLGPRSDRSPYPHSARFA 363
            R +A    E  + R    P+  R P+P   R A
Sbjct: 227 LRREAEPEAEPGNNRPVYIPQ-PRPPHPRLRREA 259


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 338 CEISHPRWDLG 348
           C +  PRWDLG
Sbjct: 180 CVVKIPRWDLG 190


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 272 PQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMPSVV--YSRESLHPNSSSPVRS 329
           P P+LRR  +P +E  + +          +P   R+A P      +R    P    P   
Sbjct: 27  PHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPR 86

Query: 330 KRSDANLMCEISHPRWDLGPRSDRSPYPHSARFA 363
            R +A    E  + R    P+  R P+P   R A
Sbjct: 87  LRREAEPEAEPGNNRPVYIPQ-PRPPHPRLRREA 119



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 272 PQPQLRRGLDPVSERPSRKQARTEPRTVTNPISPRDAMPSVV--YSRESLHPNSSSPVRS 329
           P P+LRR  +P +E  + +          +P   R+A P      +R    P    P   
Sbjct: 83  PHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPR 142

Query: 330 KRSDANLMCEISHPRWDLGPRSDRSPYPHSARFA 363
            R +A    E  + R    P+  R P+P   R A
Sbjct: 143 LRREAKPEAEPGNNRPVYIPQ-PRPPHPRLRREA 175


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,780
Number of Sequences: 429
Number of extensions: 5087
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 8
length of query: 405
length of database: 140,377
effective HSP length: 59
effective length of query: 346
effective length of database: 115,066
effective search space: 39812836
effective search space used: 39812836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)