GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002508-TA|BGIBMGA002508-PA|IPR001697|Pyruvate kinase
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   504   e-143
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   1.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   4.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   5.9  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   7.8  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  504 bits (1242), Expect = e-143
 Identities = 258/491 (52%), Positives = 321/491 (65%), Gaps = 9/491 (1%)

Query: 108 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 167
           R + IICTIGP S NV  L K+ + GMN+ RMNFSHGS+EYH   I N R+A  +     
Sbjct: 26  RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASATNPL-- 83

Query: 168 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYK 227
              F LAIALDTKGPEIRTGL  GG   +  +  G  +  TT   Y EK N   +Y+DYK
Sbjct: 84  ---FPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYK 138

Query: 228 NITNVVKPGNRIFIDDGLISI-ICQSVSADTLTCTIENGGMLGSRKGVNLPGIPVDLPAV 286
           NIT V++PG  I++DDG++S  + + V    L   + N G + S+KGVNLP   VDLPA+
Sbjct: 139 NITKVIQPGRIIYVDDGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPAL 198

Query: 287 SEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGILGEKGKNIKIISKIENHQGMVNLD 346
           SEKDK+DL FGV+ GVDMIFASFIR    +  IR +LGE+GKNIKII KIEN QG+ N D
Sbjct: 199 SEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIKIICKIENQQGVNNFD 258

Query: 347 EIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARCNRVGKPVICATQMLESMVKKPRPT 406
            I+  +DGIMVARGDLGIEIP  +VF+AQK MIA+CN  GKPV CATQMLESM   PRPT
Sbjct: 259 SILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESMTYNPRPT 318

Query: 407 RAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHRQLFNDLVSE 466
           RAE+SDV NA+LDGAD VMLSGET KG YPVE V  MA   + AEA I +  L+ ++   
Sbjct: 319 RAEVSDVGNAVLDGADLVMLSGETTKGSYPVEAVTYMAETARVAEASIPYGSLYQEMFGL 378

Query: 467 VKPPID-PXXXXXXXXXXXXTKCLASAIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTA 525
           V+ P++               +  A AIVV++TSG +A L SKYRP  PI+ VTR PQ A
Sbjct: 379 VRRPLECATETTAVAAIGASIESDAKAIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRA 438

Query: 526 RQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSGLRFGRQRGFVHPGDNAVVVTGWKQGSG 585
           RQ HL RGV P++Y++   SDW KDVD RV  G +   +   +  GD  +V+ G   G G
Sbjct: 439 RQSHLNRGVYPVIYEKEPLSDWQKDVDARVAYGCQQAYKMNILKKGDKIIVLQGAVGGKG 498

Query: 586 FTNTVRVMLVQ 596
            T+  R+ + +
Sbjct: 499 HTSIFRLTVAE 509


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 12/206 (5%)

Query: 69  TIHDGEIEAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGI--ICTIGPASRNVAVL 126
           ++H+  I +   E P+V       +H+  +   S SS  R+S    I  I  A  ++AV 
Sbjct: 130 SLHENSISSK--ESPSVTTS----KHVATITKPSTSSIARMSSNARIAAIPRAKSSMAVR 183

Query: 127 E-KMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIR 185
               +  G NV        +    +  +++    +K  ++   S  SL  +   + P  R
Sbjct: 184 SPSRLGNGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVR-PPTR 242

Query: 186 TGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDGL 245
           T          V    G   K +TS   + K NA T  V   +    V+PG+RIF ++  
Sbjct: 243 TSTTRPLSRVNVTNASGSISKNSTSPS-KVKVNASTKIVRPVSAAQTVRPGSRIFRENSA 301

Query: 246 ISIICQSVSADTLTCTIENGGMLGSR 271
            +    +VSA T   T+     L  R
Sbjct: 302 SNTQRPNVSA-TSNSTVRVASSLAVR 326


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 492 AIVVITTSGKSAHLLSKYRPRCPIIAVTRHPQTARQVHLYRGVLPIVYQEPTASD 546
           AIV ITTS     +L +Y+P          P+ A Q +      P++ +E  +SD
Sbjct: 109 AIVGITTSILKKRMLKEYQPAAEAPGAMEDPEQALQRNSLDDGAPLLPREGNSSD 163


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 120 SRNVAVLE---KMMETGMNVA--RMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLA 174
           + ++A LE   K +E  +N+   ++N  +   E    TIR    ++K+ +  LG+  ++ 
Sbjct: 742 NNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENII 801

Query: 175 IALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVK 234
             L  K  E  T L E       +  + ET+    S+   E  + ++I  +  N   + K
Sbjct: 802 SDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAK 861


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 78  GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 117
           G + + ++      L+ +   D+D+K +YI+LS    T+G
Sbjct: 15  GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,306
Number of Sequences: 5004
Number of extensions: 106242
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 5
length of query: 623
length of database: 2,362,478
effective HSP length: 77
effective length of query: 546
effective length of database: 1,977,170
effective search space: 1079534820
effective search space used: 1079534820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)