GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002508-TA|BGIBMGA002508-PA|IPR001697|Pyruvate kinase
         (623 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   5.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   7.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   7.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 489 LASAIVVITTSGKSAHLLSKYR 510
           L   ++++T +  S H+LSKY+
Sbjct: 12  LFGVLLLLTNADNSVHILSKYQ 33


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 129 MMETGMNVARMNFSHGSHEYHAETIRNC 156
           ++ET M V++    H + EY    ++ C
Sbjct: 190 LLETAMGVSKPTRDHNAFEYAMAVMKMC 217


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 70  IHDGEIEAGAVEKPTVANVGSQLQHMCGLDI 100
           +  GE+  G + K T+      L H+C L++
Sbjct: 91  VEHGELVMGILCKKTLGTSAGSLLHICMLEL 121


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 290 DKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 323
           D  D L+GV+ GVD I    + N   +H+ R I+
Sbjct: 118 DACDRLWGVDTGVDDI----LGNNTVIHQPRIII 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,081
Number of Sequences: 429
Number of extensions: 6597
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 623
length of database: 140,377
effective HSP length: 62
effective length of query: 561
effective length of database: 113,779
effective search space: 63830019
effective search space used: 63830019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)