GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002506-TA|BGIBMGA002506-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001681|Neurokinin receptor
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    31   0.27 
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    28   1.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    28   1.9  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.9  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   7.7  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 28   YFLVNLSVADAMVSTLNVTFNFTYMLNSNW 57
            YFL +L + DA+   L VTF F   ++ +W
Sbjct: 1014 YFLQDLEIEDALQQILEVTFTFLNSMHMDW 1043


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 14  WIVLTNK-RMRSVTNYFLVNLSVADAMVSTLNVTFNFTYML-NSNWPFGHFYCKFCQFIA 71
           W+  +NK  +  + NY  V  +V   +VSTL  +     +  N  WPFG F C      A
Sbjct: 286 WMKWSNKFSVAQINNYPTVITAVG--VVSTLGASVISDKLAGNPRWPFGLFLCVITTVSA 343

Query: 72  VLSISASV 79
            + ++ +V
Sbjct: 344 TILLAWNV 351


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 207 WLPFHVYFVVTSYYPDVVSYPHIQEIYLGIYWLAMSNS-MYNPIIYCWMNSKF 258
           +L  +V FVVT   P  V++     I+  +YWL    S +  P +  +M SKF
Sbjct: 94  FLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTFVLSWIILPFVQGYMESKF 146


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 2   VVVATVGNLVVI-WIVLTNKRMRSV--TNYFLVNLSVADAMVSTLNVTFNFTYMLNSNWP 58
           V+  T G++V+I WIV+     + V  +NY  +   ++ +      V++N + +LNS++ 
Sbjct: 406 VICNTFGSVVLIFWIVVPILYYKGVWFSNYLPM---LSSSTFDHTGVSYNSSRVLNSDYS 462

Query: 59  FGH 61
           F H
Sbjct: 463 FNH 465


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 3   VVATVGNLVVIWIVLTNKRMRSVTNYFLVNLSVADAM 39
           V+ T+ N ++I++VL  K+  ++ ++F +     DA+
Sbjct: 561 VIETMDNNLIIYVVLQIKQQMAIASFFQILNEYPDAV 597


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,820
Number of Sequences: 5004
Number of extensions: 40429
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 5
length of query: 305
length of database: 2,362,478
effective HSP length: 72
effective length of query: 233
effective length of database: 2,002,190
effective search space: 466510270
effective search space used: 466510270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)