GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002506-TA|BGIBMGA002506-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001681|Neurokinin receptor
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166...    30   2.0  
03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624           30   2.7  
04_04_0384 - 24853689-24853727,24853802-24853861,24854311-248543...    29   6.2  

>01_06_1691 -
           39215192-39215283,39215341-39215413,39215874-39216615,
           39216730-39217985,39218080-39218187,39218289-39218474,
           39218625-39218675
          Length = 835

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 130 TENVSLPDGTIRYNVLFMVLTYFMPIIAMTYAYSRVGVELWGSQSIGEC--TQRQLDNV 186
           +EN+S+P   +R  +   ++ Y   II+    Y RV +E W +     C  TQ+QL ++
Sbjct: 303 SENMSIPPEELRCPISLQLM-YDPVIISSGQTYERVCIEKWFNDGHSTCPKTQQQLSHL 360


>03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624
          Length = 250

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 14  WIVLT-NKRMRSVTNYFLVNLSVADAMVSTLNVTFNFTYMLNSNWPFGHFYCKFCQF 69
           W+ ++ N       N +L N +++ ++ ST   T  F  +  SNW FG  +    QF
Sbjct: 193 WVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQF 249


>04_04_0384 -
           24853689-24853727,24853802-24853861,24854311-24854357,
           24854487-24854565,24855184-24855279,24855645-24855714,
           24855787-24855857,24856010-24856105,24856501-24856628,
           24856733-24856853
          Length = 268

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 205 VCWLPFHV---YFVVTSYYPDVVSYPHIQEI 232
           +C++P H+   YF+V  Y  +VVS P   EI
Sbjct: 142 ICFMPIHLFLSYFIVQKYCSEVVSVPGSFEI 172


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,761,086
Number of Sequences: 37544
Number of extensions: 215285
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 3
length of query: 305
length of database: 14,793,348
effective HSP length: 82
effective length of query: 223
effective length of database: 11,714,740
effective search space: 2612387020
effective search space used: 2612387020
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)