Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002505-TA|BGIBMGA002505-PA|undefined
(107 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 28 0.36
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.83
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.83
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 0.83
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 26 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 1.5
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 1.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 2.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 2.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 5.9
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 23 7.8
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 23 7.8
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 23 7.8
SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M... 23 7.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 23 7.8
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 0.36
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 8 RPRGPRIKNFGYHNPRILADKSKSSTVVPQQ 38
RPR R N G HN + A K K +TV ++
Sbjct: 116 RPRARRAANEGEHNESVPAKKVKKNTVKEEE 146
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 0.83
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 29 SKSSTVVPQQASIAASTGPSQPTH-RASWPYGTHLHCLIAQHSSSVSTHRRLQAALATIT 87
S SST+ +S ++S+ S + ++S + + + + SS++++ + A+ +
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 88 QHSSSVSTHR 97
HSSS+S+H+
Sbjct: 398 SHSSSLSSHK 407
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 0.83
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 20 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVS-THRR 78
+NP+ + S +++ VP+ S + S + T Y H+ +I + S S + RR
Sbjct: 198 NNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSVSERR 257
Query: 79 LQAALATITQHSSSVS 94
L A + + + S
Sbjct: 258 LVNTRAVVLKEVQAPS 273
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 0.83
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 AQHSSSVSTHRRLQAALATITQHSSSVSTHRKLRAALALA 106
A +S++S H + Q ALA TQ S S H++ A ALA
Sbjct: 37 ALENSNISEHWKQQIALA--TQSRSFSSPHQRAHNAAALA 74
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 20 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 55
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 1.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 29 SKSSTVVPQQASIAASTGPSQPTHRASW----PYGTHLHCL-IAQHSSSVSTHRRLQAAL 83
S SS+ +S ++S+ S+P+ +S+ T + + + SSS ST + ++
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272
Query: 84 ATITQHSSSVSTHRKLRA 101
A + ++S S H L A
Sbjct: 273 AALALNASKASNHTSLNA 290
Score = 24.6 bits (51), Expect = 3.4
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 29 SKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLQAALATITQ 88
S SS+ P +S +T PS + +S + + SSS S+ ++ ++ +
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 89 HSSSVST 95
SSS S+
Sbjct: 197 SSSSSSS 203
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 1.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 31 SSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHRRLQAALATITQHS 90
+ST+ P+ S ++ST TH +S T I+ SS+ S + + T++
Sbjct: 45 TSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSD 104
Query: 91 SSV 93
S +
Sbjct: 105 SFI 107
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 2.5
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 3 ASSPPRPRGPRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGP--SQPTHRASWPYGT 60
A+SP RP P ++ H+PR + ++ Q S +S S P + P G
Sbjct: 348 ATSPFRPFSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNGG 407
Query: 61 HLHCLIAQHSSSVSTHRRLQAALATITQHSSSVSTH 96
HS S ++ + L +L + ++ + H
Sbjct: 408 GHKSFRHSHSLSETSQQTLVPSLGSNGEYHLPTNDH 443
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 2.5
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 20 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIA--QHSSSVSTHR 77
+N I + +S + ++ T ++ S+P+G + + + QH SS+S H
Sbjct: 121 NNSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHT 180
Query: 78 RLQAALATITQHSSSVSTHRKLRAALALAS 107
+ ++ S S+ +K ++ + A+
Sbjct: 181 HFNPSSSSTVSSDSLESSQQKAPSSSSTAT 210
Score = 24.2 bits (50), Expect = 4.5
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 2 LASSPPRPRGPRIKNFGYHNPRILADKSKSS---------TVVPQQASIAASTGPSQPTH 52
LA+S PR++ HN + + KS +S P+ A+I+ + S+ +
Sbjct: 507 LANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNGLRASTPEMANISTRSS-SESNN 565
Query: 53 RASWP 57
SWP
Sbjct: 566 TNSWP 570
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 5.9
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 3 ASSPPRPRGPRIKNFGYHNPRILADKSKSSTV-VPQQASIAASTGPS 48
AS+ P P P N G +NP + ++ + + P Q + PS
Sbjct: 108 ASNGPTPPNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAPS 154
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 23.4 bits (48), Expect = 7.8
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 19 YHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRA 54
Y N +L SS+ + +++ +++ P +P H +
Sbjct: 24 YSNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHNS 59
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 23.4 bits (48), Expect = 7.8
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 35 VPQQASIAASTGPSQP---THRASWPYGTHLHCLIAQHSSSVSTHRRLQAALATITQHSS 91
+P +A +G QP ++ + + L++ SVST ATI+Q S+
Sbjct: 368 MPSEAKGFIESGAGQPLGFNAPSNQEFSANATALVSPGPHSVSTTINTNIVQATISQSST 427
Query: 92 SVSTHRKLRAALALAS 107
S S+ A+ +S
Sbjct: 428 SGSSSGSSSASTTASS 443
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 7.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 6 PPRPRGPRIKNFGYHNPRILADKSKSSTVVP 36
P +P G + G+H R + + K+ T P
Sbjct: 91 PSKPNGGAYQGIGFHYGRFVMNLRKALTSTP 121
>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
3|||Manual
Length = 124
Score = 23.4 bits (48), Expect = 7.8
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 2 LASSPPRPRGPRI 14
+AS+PP+P+GP +
Sbjct: 1 MASNPPQPQGPAL 13
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.4 bits (48), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 24 ILADKSKSSTVVPQQASIAASTGPSQPTHRA 54
IL DK+K+ + + AS + SQ H A
Sbjct: 324 ILVDKAKAKASIKENASQPVAPSASQREHSA 354
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.122 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,894
Number of Sequences: 5004
Number of extensions: 14634
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 20
length of query: 107
length of database: 2,362,478
effective HSP length: 64
effective length of query: 43
effective length of database: 2,042,222
effective search space: 87815546
effective search space used: 87815546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)
- SilkBase 1999-2023 -