Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002504-TA|BGIBMGA002504-PA|IPR005225|Small GTP-binding
protein domain, IPR006687|GTP-binding protein SAR1, IPR006689|ARF/SAR
superfamily, IPR006688|ADP-ribosylation factor, IPR001806|Ras GTPase
         (193 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.15 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.83 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.83 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 16  LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELSIGSMRFTTFD 70
           L K+   +  +G  + GKTTLL  L++  +A+         +      L  G  R T  D
Sbjct: 141 LIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGE-RVTFLD 199

Query: 71  LGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNK 130
             GH     +        D +V +V A D  +  E   +   +  D   +  P+++  NK
Sbjct: 200 TPGHAAFISMRHRGAHITDIVVLVVAADDGVK--EQTLQSIEMAKD---AKVPIIVAINK 254

Query: 131 IDKP 134
           IDKP
Sbjct: 255 IDKP 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 96   DACDRPRLPESKAELDSL 113
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 96   DACDRPRLPESKAELDSL 113
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 13  FLGLWKKSGKLLFLGLDNAGKTTL 36
           F+  +K  GK+L L +  AGK+ +
Sbjct: 127 FVADYKIEGKVLLLPVRGAGKSNI 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.141    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,122
Number of Sequences: 429
Number of extensions: 2130
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 140,377
effective HSP length: 54
effective length of query: 139
effective length of database: 117,211
effective search space: 16292329
effective search space used: 16292329
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)