GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002503-TA|BGIBMGA002503-PA|IPR001214|SET,
IPR003616|Post-SET zinc-binding region
         (147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...   149   1e-37
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...   104   5e-24
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    58   4e-10
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    34   0.010
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    31   0.072
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    28   0.67 
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   2.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   4.7  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score =  149 bits (362), Expect = 1e-37
 Identities = 69/143 (48%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

Query: 6   RNNVYLARSKIQGLGLYAARDLEKHTMVIEYIGEIIRSELSEMREKKYESRNRG-VYMFR 64
           +  ++   S+I  LGL+A  +++K+ MVIEYIGEIIR  +++ REK Y     G  Y+FR
Sbjct: 780 KKQLHFGPSRIHTLGLFAMENIDKNDMVIEYIGEIIRQRVADNREKNYVREGIGDSYLFR 839

Query: 65  LGERRVIDATLCGGLARYINHSCQPNCVAETVEVDRCLRIIIFAKRRISRGEELTYDYKF 124
           + E  ++DAT  G +AR+INHSC PNC+A  + V+   +I+I+A R I  GEELTYDYKF
Sbjct: 840 IDEDVIVDATKKGNIARFINHSCAPNCIARIIRVEGKRKIVIYADRDIMHGEELTYDYKF 899

Query: 125 DIEDDAHKIMCMCGAPNCRKWMN 147
              ++A KI C+CGAP CR ++N
Sbjct: 900 --PEEADKIPCLCGAPTCRGYLN 920


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score =  104 bits (250), Expect = 5e-24
 Identities = 60/136 (44%), Positives = 75/136 (55%), Gaps = 4/136 (2%)

Query: 8   NVYLARSKIQGLGLYAARDLEKHTMVIEYIGEIIRSELSEMREKKYESRN-RGVYMFRLG 66
           +V+L   K  G GL A  +L K T V EYIGE+I  +    R ++Y+S   +  Y   L 
Sbjct: 183 DVFLTEKK--GFGLRADANLPKDTFVYEYIGEVIPEQKFRKRMRQYDSEGIKHFYFMMLQ 240

Query: 67  ERRVIDATLCGGLARYINHSCQPNCVAETVEVDRCLRIIIFAKRRISRGEELTYDYKFDI 126
           +   IDAT  G LAR+ NHSC+PNC  +   V   LR+ IF KR I RGEELT+DY  D 
Sbjct: 241 KGEYIDATKRGSLARFCNHSCRPNCYVDKWMVGDKLRMGIFCKRDIIRGEELTFDYNVD- 299

Query: 127 EDDAHKIMCMCGAPNC 142
              A    C CG P C
Sbjct: 300 RYGAQAQPCYCGEPCC 315


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 23/156 (14%)

Query: 13  RSKIQGLGLYAARDLEKHTMVIEYIGEIIRSELSEMREKKYESRNRGVYMFRL-----GE 67
           ++K +G G+ + R     T +  Y+GE+I S  +  R+K Y+      Y+F L       
Sbjct: 334 KTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGI-TYLFDLDMFDDAS 392

Query: 68  RRVIDATLCGGLARYINHSCQPNCVAETVEVDRCLRII----IFAKRRISRGEELTYDY- 122
              +DA   G ++R+ NHSC PN    +   +   R I     FA + I   EELT+DY 
Sbjct: 393 EYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYA 452

Query: 123 ----------KFDIEDDAHKI--MCMCGAPNCRKWM 146
                     +   ++   K+   C CG+ NCR W+
Sbjct: 453 GAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 488


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 20  GLYAARDLEKHTMVIEYIGEII-RSELSEMREKKYE--SRNRGVYMFRLGERRVIDATLC 76
           GL +  ++  +T ++E  G +  ++E     + +Y      +    F    + V+D+ + 
Sbjct: 228 GLVSTCEIPPNTPIMEVKGRVCTQNEYKSDPKNQYNILGAPKPHVFFDSNSQLVVDSRVA 287

Query: 77  GGLARYINHSCQPNCVAETVEV---DRCLRIIIFAKRRISRGEELTYDYKFDI 126
           G  AR+    CQ N V  +V +   +   R I+++   I+   E+  D+  DI
Sbjct: 288 GSKARFARKGCQSNSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDWTLDI 340


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 31.1 bits (67), Expect = 0.072
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 54  ESRNRGVYM-FR-LGERRVIDATLCGGLARYINHSCQPNCVAETVEVDRCLRIIIFAKRR 111
           E RN G+   F  L   R+    L  G AR++NH C  NC   T      LR +    R 
Sbjct: 154 EERNIGIGKDFSILHSSRLDSMCLFLGPARFVNHDCNANCRFNTSGKRIWLRCV----RD 209

Query: 112 ISRGEELTYDY 122
           I  GEE+T  Y
Sbjct: 210 IKPGEEITTFY 220


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 83  INHSCQPNCVAETVEVDRCLRIIIFAKRRISRGEELTYDY 122
           +NHSC PNC    +  D  + + + +KR I + E+L   Y
Sbjct: 192 LNHSCDPNC---QIIFDGAI-VQLVSKRDIKKDEQLFISY 227


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 8   NVYLARSKIQGLGLYAARDLEKHTMVIEYIGEIIRSELSEMREKKYESRNR 58
           ++ L R++    GL   +DLE+    +  +   +  ELSE  EK  ESR +
Sbjct: 357 SLQLKRARYDTFGLGNIKDLEEEEEKLRSVEGSLNEELSE-EEKPAESREQ 406


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 76  CGGLARYINHSCQPNCVAETVEVDR--CLRIIIFAKRRISRGEELTYDYKFDIEDDAHKI 133
           CG    Y  H CQ  C A     +R  C   +  +       +++T D  +D  D  HK+
Sbjct: 731 CGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKKVTCDASYDNPDPQHKV 790

Query: 134 MC 135
            C
Sbjct: 791 SC 792


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 8   NVYLARSKIQGLG--LYAARDLEKHTMVIEYIGEIIRSELSEMREKKYESRN 57
           +VY   + + GL   L+AA DL +H     +   +I+ ++     KK++ R+
Sbjct: 413 SVYRTLTLLLGLQGELFAAFDLNRHDFAAMWNQMLIQDDMINANTKKFDPRH 464


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,207
Number of Sequences: 5004
Number of extensions: 23063
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 10
length of query: 147
length of database: 2,362,478
effective HSP length: 67
effective length of query: 80
effective length of database: 2,027,210
effective search space: 162176800
effective search space used: 162176800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)