GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002502-TA|BGIBMGA002502-PA|IPR013032|EGF-like region,
IPR001965|Zinc finger, PHD-type, IPR001951|Histone H4, IPR001841|Zinc
finger, RING-type, IPR003888|FY-rich, N-terminal, IPR011011|Zinc
finger, FYVE/PHD-type, IPR011009|Protein kinase-like
         (4269 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               30   0.35 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.82 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    28   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          28   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    27   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   7.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 1157 SDSEGEDVLAALTSFNDHDN---TVIITLNNEELELMQSLKPKQEKEDPSNTNSDGVKIK 1213
            +D   E+ L+A  SF   D         +N     + Q+ KPK+E +D  +  SD   IK
Sbjct: 40   ADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENIK 99

Query: 1214 TESDDGQVKQTED 1226
            ++ +      ++D
Sbjct: 100  SQKEFPNSSSSDD 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 15/99 (15%)

Query: 3908 NIILDGKSKTSVKDDNKSDVETNLSKDRDDFDTASTESMETDDLDMKPDIKDEKMDLSFM 3967
            ++I   + K  V+D    D++T LS   +D     TE  E +D         +K+DL   
Sbjct: 285  SMITTPEIKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEEND---------KKLDL--- 332

Query: 3968 DSLDNDELMKEVGDDVSALDEDLKRVEQDEKSNQSTEKE 4006
            DS+D  +L  ++ D +  LD D+K   +DE+     +KE
Sbjct: 333  DSIDMMQLPIQLDDGIDILD-DVKC--EDERVISIPDKE 368


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly protein
            MRJP2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 2/34 (5%)

Query: 3250 ETEDSTNTSSGNDISGKNSQHSNANNQRNDESQN 3283
            + ++  NT++ ND + KN++  NANNQ+N+ +QN
Sbjct: 419  QNDNIQNTNNQNDNNQKNNK-KNANNQKNN-NQN 450


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 3140 LPFNPQSISSSQPPALVMTSRPLIGNKEPPPNVTVRTHNMVTPGMGQMQAKQSQGSLNFI 3199
            L  +   IS+ +  AL++      GN +PP N      N+    M +     S   ++  
Sbjct: 501  LSMSDYDISNIEHEALLLVITSTFGNGDPPENGEAFAQNLYAMKMNETYI-NSGNKISLA 559

Query: 3200 TSSKLLHTQLTSPLKRSKSTD 3220
            TS   +     + +  SK  D
Sbjct: 560  TSKSFIKANSQTEVSNSKKLD 580


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 3241 AVVVKSEPMETEDSTNTSSGNDISGKNSQHSNANNQRNDESQN 3283
            AVV+++    + +ST T+   + +  N+ ++N NN  N+   N
Sbjct: 213  AVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGAN 255


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 10  EVDLLADDGSEDEGDAPPSSEFYTGPGSTPTSCASSPRGEE 50
           ++D  +D G E  G   P     +   S PTS  SSPR E+
Sbjct: 573 KLDSPSDSGIES-GTEKPDKPASSSASSAPTSVCSSPRSED 612


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
            protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 3627 GDEEPLPEKPPASTQRGFYDQEFQPIMFDEDP-EDKKLDF 3665
            G  E  P +P ++  + + DQ++QPI F  D  ED K  F
Sbjct: 414  GKCEHRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKEKF 453


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 3319 SLEAQLARPSIPPPTIALSQEVELPKNSPRQMTTVSSPF 3357
            +L  Q A P+    T+++ Q+ +LP +SP+   TV+  +
Sbjct: 1262 ALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAY 1300


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,365
Number of Sequences: 429
Number of extensions: 43554
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 20
length of query: 4269
length of database: 140,377
effective HSP length: 72
effective length of query: 4197
effective length of database: 109,489
effective search space: 459525333
effective search space used: 459525333
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)