Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002501-TA|BGIBMGA002501-PA|IPR001763|Rhodanese-like
         (139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   8.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 99  LIFYCMAGRRSAKAQESAINLGFKNTKN 126
           ++F+      +A +   AIN GF+ TK+
Sbjct: 263 MLFFYWRIYNAAVSTTKAINQGFRTTKS 290


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 29  VADYDEVVKAISNNNILL 46
           V D    VKA+S N +LL
Sbjct: 300 VFDSQLTVKAVSKNGVLL 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,557
Number of Sequences: 429
Number of extensions: 1836
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 139
length of database: 140,377
effective HSP length: 52
effective length of query: 87
effective length of database: 118,069
effective search space: 10272003
effective search space used: 10272003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)