GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002501-TA|BGIBMGA002501-PA|IPR001763|Rhodanese-like
         (139 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   1e-15
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               65   2e-11
SB_35542| Best HMM Match : Rhodanese (HMM E-Value=2.9)                 53   1e-07
SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_4514| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.009
SB_1644| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.016
SB_9913| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.021
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 28   3.2  
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 27   4.3  
SB_55838| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)                    27   7.5  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         26   9.9  

>SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 39  ISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQ-NT 97
           +S  +I L DVR P+E+ + G IP ++NIPL  I+     +    F + Y  P P++ + 
Sbjct: 438 LSKADIQLFDVRNPEELLETGQIPGAVNIPLSDITAAF-MLPPAIFEQIYDVPMPSKTDN 496

Query: 98  ELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 134
            ++F+C  G R+  A ++  NLGFK T NY G W EW
Sbjct: 497 NIVFHCKTGVRAQNAIDTLKNLGFKGTHNYTGGWVEW 533



 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 26  ETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFN 85
           ET+V+  +E+   I    I L DVREP E+++ G IP SINIPL  +      M  KEF 
Sbjct: 283 ETEVS-IEELQLLIKQQAIQLFDVREPYELEESGKIPFSINIPLRQVPEAF-TMKPKEFK 340

Query: 86  KTYKRPKP-NQNTELIFYCMAGRRSAKAQESAINLGFKN 123
             Y   KP  ++T+++F+C AG RS  A ++  ++GF+N
Sbjct: 341 LKYGAKKPKRKDTDIVFHCKAGIRSKTALKAVRSMGFRN 379


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 18  RLYSESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLG 77
           R Y E+  E  ++   E+   +S  +I L DVR+P+E+ + G IP ++NIPL  I++   
Sbjct: 51  RCYEENGGEVTLSCLKEL---LSKEDIQLFDVRDPEELLETGQIPGAVNIPLSDITSAF- 106

Query: 78  EMSDKEFNKTYKRPKPNQ-NTELIFYCMAGRRSAKAQESAINLGF 121
            +    F + Y  P P++ +  ++F+C  GRRS +A ++  N+G+
Sbjct: 107 SLPPNIFEQIYDVPMPSKTDNNIVFHCRTGRRSQQAIDTLQNIGY 151



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 37  KAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQ- 95
           K IS  NI L DVR  +E+   G IP ++NIPL  I++    ++ ++F +TY+ P P + 
Sbjct: 207 KLISEKNIQLFDVRSREEIMQSGEIPMAVNIPLSDIASAF-SLAPEKFEQTYRVPMPKKT 265

Query: 96  NTELIFYCMAGRRSAKAQESAINLGFKNTKN 126
           +  ++ +C +GRR+ +A E     GF   ++
Sbjct: 266 DNNIVIHCRSGRRAERAMEILREHGFTGLRS 296



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 37  KAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQ- 95
           K ++  NI L DVR P+EV + G IP ++NIPL    +    +S   F   Y+ P P + 
Sbjct: 385 KLMAEKNIQLFDVRNPEEVFEAGKIPGAVNIPLTDFESAFA-LSPVVFEFVYRAPMPKKS 443

Query: 96  NTELIFYCMAGRRSAKAQESAINLGF 121
           +  ++ +C++G  + +A +     GF
Sbjct: 444 DNNIVIHCISGEHAQEAIDILKENGF 469


>SB_35542| Best HMM Match : Rhodanese (HMM E-Value=2.9)
          Length = 82

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 79  MSDKEFNKTYKRPKPNQ-NTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 134
           ++ ++F +TY+ P P + +  ++ +C +GRR+ +A E     GF  T N+ G WTEW
Sbjct: 10  LTPEKFEQTYRVPMPKKTDNNIVIHCRSGRRAERAMEILREHGFTGTHNFTGGWTEW 66


>SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 13/120 (10%)

Query: 15  LSLRLYSESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTIST 74
           L + ++SE +   K        + I+  + LL+D+R   E  D GHI N+ +IP+  I  
Sbjct: 22  LFMLIWSEGQKAGKSVSPAIATQLINKEDALLLDIRTKKEW-DTGHIANAKHIPVADIDR 80

Query: 75  VLGEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 134
            L E+      K   RP       +I  C  G+ +    +     GF+N    QG  TEW
Sbjct: 81  RLSELE-----KYKARP-------VIVVCNLGQVAGSVSKRLKAAGFENVTRLQGGITEW 128


>SB_4514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 79  MSDKEFNKTYKRPKPNQN-TELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 134
           +S   F   Y+ P P ++   ++ +C++G  + +A +     GF     + GSW EW
Sbjct: 10  LSPVVFEFVYRAPMPKKSDNNIVIHCISGEHAQEAIDILKENGFTGEHYFTGSWDEW 66


>SB_1644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 29  VADYDEVVKAI-SNNNILLIDVREP-----DEVKDH-----GHIPNSINIPLGTISTVLG 77
           + DYD ++  I S   + ++D R P     DE +       GH+P S + P G    +  
Sbjct: 162 IVDYDFIMNNIKSEPRVTVLDARPPGRFTGDEPEPRPDLPSGHMPQSRSFPFGKCLDMEN 221

Query: 78  EM--SDKEFNKTYKRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWA 135
           +   S +   K +     +    L+  C +G   +         G  +TK Y GSWTE+ 
Sbjct: 222 KCLKSPEALKKVFADAGVDLTKPLVTSCGSGVTGSGLLFGTFLCGKTDTKLYDGSWTEFV 281

Query: 136 SK 137
            +
Sbjct: 282 QR 283


>SB_9913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 39 ISNNNILLIDVREPDEVKDHGHIPNSINIP 68
          +S  +I L DVR P+E+ + G IP ++NIP
Sbjct: 70 LSKADIQLFDVRNPEELLETGQIPGAVNIP 99


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 53  DEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTEL 99
           DEV        SIN  L T+  V+  +SDKE NK  K   P +++ L
Sbjct: 546 DEVITSAEEGGSINKSLHTLGKVISLLSDKELNKKKKLYIPYRDSIL 592


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 40  SNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPK 92
           S+ +I   DV+E +   DH H+  SI+ P  T  T   E+S     K  KR K
Sbjct: 210 SDEDIDWEDVKEAEGHHDHHHLQTSISSPHKTSPTKNVEISINVSGKKGKRKK 262


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 3   VPEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIP 62
           V  YK +  ++ L+   Y E+  E KV + +++   +SN+  +  ++  P E K    +P
Sbjct: 104 VDSYKVLNSMDNLNWGTYQETAGEDKVFERNQI--HVSNS--VKFELNTPVEAKFIRFVP 159

Query: 63  NSINIPLGTISTVLGEMSDKEF 84
            ++      I  + GE+S+ +F
Sbjct: 160 VTVYGHKSMIVELFGELSNVKF 181


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 39  ISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSD 81
           I   + L  D+R P +++  GH P ++    G ++ +LG ++D
Sbjct: 456 IQEASCLPYDLRLPYDLRFSGHAPCTLYCRRGNVAEILGPVAD 498


>SB_55838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 58  HGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQ 95
           HG    S+  P G I+ + G +  KE  KT  + KP +
Sbjct: 202 HGIKFQSVVAPNGLIANLFGPVEVKELKKTSSQEKPER 239


>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
          Length = 267

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 36  VKAISN-NNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPN 94
           + A+S+ + +LL+D  + +E    GH+  ++NI       V+G     E ++ ++  + +
Sbjct: 70  ITALSHFSELLLVDPNDKEEAVMDGHMMMALNIHREVCGAVMGGGVSLETDQDHEEMEKD 129

Query: 95  QNT 97
           ++T
Sbjct: 130 EDT 132


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 84  FNKTYKRPKPNQNTELIFYCMAGRRSAKAQESAINL 119
           FNK  K   P   TELI +  A ++ A+  E   ++
Sbjct: 491 FNKREKIKHPTNRTELIIFFSAHKKKAQPTEGVCDI 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,678,922
Number of Sequences: 59808
Number of extensions: 176470
Number of successful extensions: 286
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 16,821,457
effective HSP length: 75
effective length of query: 64
effective length of database: 12,335,857
effective search space: 789494848
effective search space used: 789494848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)