Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002500-TA|BGIBMGA002500-PA|undefined
         (604 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   1.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   7.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   7.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   7.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   9.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   9.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 410 NQERDEIIKDLMNLEKNVHKNKMETDNKT-NIIDEQITSGRSYIQDFGIYMFDDSDATS- 467
           N +R+E +  L +  +NV  N +  ++    I+   +      I++     FD+ D    
Sbjct: 369 NTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVND---LIRNSRCANFDNQDNNHY 425

Query: 468 EANHDVNRSENPWDSIDKDSNNDHNHFSAE 497
             NH+  R  +  D+ + + +ND  H S++
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 389 IDCLMSTPKHNAESCFENERANQERDEII 417
           I+C +S P+ +A+SC     A + RD I+
Sbjct: 372 IECNIS-PRSSADSCQVGIMAQRHRDTIV 399


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 246 NYDKGP---GQFAHQDALNSLNEILPDTFGEQES 276
           N   GP   G+F H DA    +++ PD     ES
Sbjct: 41  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGES 74


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 246 NYDKGP---GQFAHQDALNSLNEILPDTFGEQES 276
           N   GP   G+F H DA    +++ PD     ES
Sbjct: 46  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGES 79


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 210 IEKVADPSEIKSIDDLSKSIERGEMILGQKNFSTMNNYDKGPGQFAHQDALNSLN 264
           I++   P E    DD        E I  QK F   ++ D       HQ A  SLN
Sbjct: 75  IQQAGKPKE--ETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLN 127


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 246 NYDKGP---GQFAHQDALNSLNEILPDTFGEQES 276
           N   GP   G+F H DA    +++ PD     ES
Sbjct: 46  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGES 79


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 341 MSLLDTKISHLNENLNQSYNSLTVEDLRRNDEYD 374
           +S L  K  H N N   +YN+    +   N+ Y+
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYN 348


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 425 KNVHKNKMETDNKTNIIDEQITSGRSYIQD 454
           KNV+KN +ET N+ +  +    + +  ++D
Sbjct: 34  KNVYKNNIETKNQLSPFNIDTPNRQKILKD 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,317
Number of Sequences: 429
Number of extensions: 7387
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 8
length of query: 604
length of database: 140,377
effective HSP length: 62
effective length of query: 542
effective length of database: 113,779
effective search space: 61668218
effective search space used: 61668218
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)