GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002500-TA|BGIBMGA002500-PA|undefined
         (604 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    25   1.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   2.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   4.6  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   4.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   4.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   4.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   4.6  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 180 GSYINVNEQVLLDMVQSSEIQYEVIEQPNIIEKVADPSEIKSIDDLSKSIE 230
           G  +++ +Q+L +   +    + + EQP I  KV  P  +K I ++  + E
Sbjct: 16  GKSLSIPQQILNEFKSTLLPLFGLKEQPKIEGKVQVPEALKKIYNIQNNFE 66


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 431 KMETDNKTNIIDEQITSGRSYIQDFGIYMFDDSDATSEANHDVNRSENP 479
           K+ T+N+  I DE +   R  +++F I +     A     +  +R E P
Sbjct: 101 KIRTENQKKIFDESVIFERKVMKNFAILIIPTCVAMFIVPYFQDRREMP 149


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 100 YMENDVMYADPNVSANIMDSASTYCKDNSESAASSYNN 137
           Y    ++   P  S        ++  ++S SAASSY N
Sbjct: 184 YQSYQILLPTPTCSEASSSPTPSHSSESSFSAASSYTN 221


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 463 SDATSEANHDVNRSENPWDSIDKDSN 488
           +D T   +   N+SE+ W ++ +D N
Sbjct: 249 TDRTQSMSESKNKSESAWKNLREDYN 274


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 463 SDATSEANHDVNRSENPWDSIDKDSN 488
           +D T   +   N+SE+ W ++ +D N
Sbjct: 249 TDRTQSMSESKNKSESAWKNLREDYN 274


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 463 SDATSEANHDVNRSENPWDSIDKDSN 488
           +D T   +   N+SE+ W ++ +D N
Sbjct: 249 TDRTQSMSESKNKSESAWKNLREDYN 274


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 139 KITSPSNTATTKMNTAMSQYVNALKNAGLPTDLPILFESGDGSYINVNEQ 188
           K  S + T+ TK+  + +    A ++   PT +P    S     +N+ ++
Sbjct: 192 KSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKE 241


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.127    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,653
Number of Sequences: 317
Number of extensions: 5620
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 604
length of database: 114,650
effective HSP length: 61
effective length of query: 543
effective length of database: 95,313
effective search space: 51754959
effective search space used: 51754959
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)