GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002498-TA|BGIBMGA002498-PA|undefined
         (135 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.18 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.18
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 54  PQQASIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVST 93
           PQ A   +ST  S PT R S S  T+    +    SSV T
Sbjct: 71  PQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPT 110


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 38   HNPRILADKSKSSTVVPQQASIA 60
            +NP I A + KS   V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 38   HNPRILADKSKSSTVVPQQASIA 60
            +NP I A + KS   V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 46  KSKSSTVVPQQASIAASTGP 65
           K K  TVVP+   +  + GP
Sbjct: 152 KCKPKTVVPEVGGVEEAKGP 171


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.122    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,214
Number of Sequences: 317
Number of extensions: 1160
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 135
length of database: 114,650
effective HSP length: 51
effective length of query: 84
effective length of database: 98,483
effective search space:  8272572
effective search space used:  8272572
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)