Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002498-TA|BGIBMGA002498-PA|undefined
(135 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 0.73
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 29 0.97
02_03_0134 - 15596379-15597689 29 0.97
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 29 1.3
01_06_0745 - 31632119-31632212,31632244-31632427,31632974-316330... 29 1.3
07_01_0083 - 629819-630260,631695-631838,632906-633186 27 5.2
12_02_0674 - 21745321-21746223,21746229-21747608 27 6.8
11_02_0125 + 8572035-8572112,8573603-8574016,8574171-8574428,857... 27 6.8
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 27 6.8
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 26 9.0
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 26 9.0
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 0.73
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 2 IKERIAGNDLVLGSHNSSLSPSAELQLEERIKNFGYHNPRILADKSKSSTVVPQQA---- 57
I+ I ND+ + +HN + + +EE +++P + D S + + ++A
Sbjct: 4739 IEGNIVRNDIEMVTHNCEICDNCANTMEEDTNGSSHNSPTHVMDSSNTLIYIIKEAITGD 4798
Query: 58 --SIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVSTHRRLQSSTGDNHAAFKLS 111
I +S + H AS S+G ++ + S S S+ R SS D + +
Sbjct: 4799 EEGIDSSILVTDLQHVASGSHGGNMCPKYFRSSESNSSSRTCISSYNDTKMEYNFT 4854
>10_08_0569 +
18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 29.5 bits (63), Expect = 0.97
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 20 LSPSAELQLEERIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASCSYG 77
L P A L+L +RI+ F Y A S SS+ + A P PT + C G
Sbjct: 20 LHPLAVLKLSDRIREFQY-QAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMSGCVIG 76
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.5 bits (63), Expect = 0.97
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 54 PQQASIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVSTHRRLQSSTGDNHAAFKLSFD 113
P + A + PS P + S S+ + SSS ST ST + ++ S
Sbjct: 28 PAKGLRRARSVPSSPDRKLSPSHDASSSNAY-RPSSSFSTRTGTSRSTFGSASSSIHSSK 86
Query: 114 SPQTSSSTGTCKLITARTTLTK 135
+PQTSSST T K A TT K
Sbjct: 87 APQTSSSTTTAK--PANTTKGK 106
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 40 PRILADKSKSSTVVPQQASIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVSTHRRLQS 99
P +L+D+ S + P + +TG + A CS T L+ +++ +S+++ + +
Sbjct: 31 PVLLSDRLLPSGMPPSMRPSSPATGMAVSVAEAGCSKDTFLNRSVSEETSAITKGNGMFN 90
Query: 100 STGDNHA 106
HA
Sbjct: 91 PQDQRHA 97
>01_06_0745 -
31632119-31632212,31632244-31632427,31632974-31633048,
31633335-31633569
Length = 195
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 43 LADKSKSSTVVPQQASIAASTGPS-QPTHRASCSYGTHLHCLI 84
L K SS V Q+ AA GP+ +PT A C G C++
Sbjct: 29 LVAKVLSSKTVVQKGRAAAGAGPAARPTRIAECLIGDETGCIL 71
>07_01_0083 - 629819-630260,631695-631838,632906-633186
Length = 288
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 68 PTHRASCSYGTHLHCLIAQHSSSVSTHRRLQSSTGDNHAAFKLSFDSPQTSSS 120
P A+ + +H+H + A ++ S H++L S+ L+ +P +SSS
Sbjct: 184 PRAAATAAGFSHIHAMAALAAAPFSAHQQLYSNLQPPPPTMPLAATTPASSSS 236
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 109 KLSFDSPQTSSSTGTCKLITARTTLT 134
KL+ S + SS TG CK T+ +T T
Sbjct: 692 KLTASSCKVSSPTGACKFSTSTSTFT 717
>11_02_0125 +
8572035-8572112,8573603-8574016,8574171-8574428,
8574781-8574966
Length = 311
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 74 CSYGTHLHCLIAQHSSSVSTHRRLQSST 101
CSYG + H LI++ ++S + +ST
Sbjct: 60 CSYGANTHLLISEVIMAISNKNAMNNST 87
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 26.6 bits (56), Expect = 6.8
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 20 LSPS-AELQLEERIKNFGYHNPRILADKSKSS-------TVVPQQASI----AASTGPSQ 67
LSPS A++QLE+ + + Y P +L+D +K S TV P A + P
Sbjct: 92 LSPSSAKMQLED-VSDTLYVRPSLLSDATKKSGPAAPSLTVSPAIAELIRGKIGRAAPRP 150
Query: 68 PTHRASCSYGTHLHCLIAQHSSSVSTH 94
P H A C + +SS S+H
Sbjct: 151 PRHAAPCWSDCDCKVCHSWSASSRSSH 177
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 38 HNPRILADKSKSSTVVPQQASIAASTGPSQP 68
H+P+ + SK+ST +P+ I+ + GP+ P
Sbjct: 389 HSPQ---EDSKTSTKIPKTRDISEAVGPNSP 416
>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 27 QLEERIKNFGYHNPRILADKSKSSTVVPQQASI 59
Q + N GYH R+L+ K+ V AS+
Sbjct: 1269 QFNAEVLNTGYHKHRVLSSKASGEPAVVLGASV 1301
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.122 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,804,133
Number of Sequences: 37544
Number of extensions: 135631
Number of successful extensions: 300
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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