GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002498-TA|BGIBMGA002498-PA|undefined
         (135 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   0.88 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   0.88 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   1.5  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   3.5  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 52  VVPQQASIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVSTHRRLQSST 101
           V+ QQ + ++ST  S  + + S      LH     HSS+  + RR Q S+
Sbjct: 3   VISQQPTASSST-TSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSS 51


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 52  VVPQQASIAASTGPSQPTHRASCSYGTHLHCLIAQHSSSVSTHRRLQSST 101
           V+ QQ + ++ST  S  + + S      LH     HSS+  + RR Q S+
Sbjct: 3   VISQQPTASSST-TSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSS 51


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 4   ERIAGNDLVLGSHNSSLSPSAELQLEERIKNFGYHNPRILADKSKSSTVVPQQASIAAS 62
           E I+G+ L+   +N       E+Q+ E    F Y   R +A + K + +  Q+A   AS
Sbjct: 166 EEISGSGLLKEDYNRL---KHEMQMAEEETQFTYQKKRGIAAERKEARLEKQEADRYAS 221


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 60  AASTGPSQPTHR 71
           AA+TGP  PTHR
Sbjct: 913 AAATGPPPPTHR 924


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 88  SSSVSTHRRLQSSTGDNHAAFKLSFDSPQTSSSTGT 123
           S S S  R+ ++   D+ A    +   P TSSS+GT
Sbjct: 284 SRSRSCSRQAETPRADDRALNLDTKSKPSTSSSSGT 319


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.311    0.122    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,524
Number of Sequences: 2123
Number of extensions: 4376
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 516,269
effective HSP length: 58
effective length of query: 77
effective length of database: 393,135
effective search space: 30271395
effective search space used: 30271395
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)