GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002497-TA|BGIBMGA002497-PA|undefined
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    38   0.002
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    27   2.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   2.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   4.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   4.6  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   6.1  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 108 LVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLAIHILSG 167
           LV N GQY       TF+      +K I           KN V  I+    P  IH+L+ 
Sbjct: 133 LVPNEGQYHAN--ASTFAPYVDSRTKAIGLSSVMFHSGQKNDVKDIANAFRPKGIHVLAD 190

Query: 168 LLEMSNLGLSKVYIYDKDCSAEHMELVERQCNYIMTCNSGKTVKYVEKLGMA 219
           L +   +GLSK+ + D + SA         C+  + C +G  V YV  L ++
Sbjct: 191 LTQ--QVGLSKIDVQDLNVSA-----CAFSCHKGLGCPTGLGVLYVSPLAIS 235


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 116 QEKLKVETFSKPTAEFSKVIASE--MKPNEKCHKNIVITISGVSNPL 160
           +++LK ETF+    +  +VI     ++ +E C K IV TI+   +PL
Sbjct: 87  KQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAKFVSPL 133


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 62  NSPIVWKEMLMKGSKPVYIGGAS--EFLEYCYSYYN 95
           N+PIV +EML +   P  +GG+S  EF++    +Y+
Sbjct: 130 NTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYS 165


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/132 (17%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 121 VETFSKPTAEFSKVIASEMKPNEKCHK--NIVITIS-GVSNPLAIHILSGLLEMSNLGLS 177
           +E F  P      +  + +K      +  N ++ I+ G +  + +++ +  ++  N+G  
Sbjct: 346 IENFDLPAPNKYALYVTNIKSGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIGNV 405

Query: 178 KVYIYDKDCSAEHMELVERQCNYIMTCNSGKTVKYVEKLGMA-LTHTNLLIILDHVLFKY 236
            +Y+ DKD       L +     I+      +V+Y+  LG+   T     ++ +    + 
Sbjct: 406 SLYVLDKDIEPPQPLLSQ----LILVDEISFSVRYLASLGLGDYTKVTWFLVKNSAWTQL 461

Query: 237 VLVYIIVGKESE 248
            LV++++ +  E
Sbjct: 462 GLVHLVLQQNLE 473


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 4/27 (14%)

Query: 52  INQKNKWHHINSPIVWKEMLMKGSKPV 78
           +N++++WH + +PIV    L KG  PV
Sbjct: 566 LNKQSQWHDLENPIV----LKKGQAPV 588


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 102 SSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLA 161
           S K    +K  G Y+EK+  E   +   E  K +    KP +   +  ++  S      A
Sbjct: 714 SDKEKQFIKEIGNYKEKVTGERGIEKRVETLKTLLQRTKPRDA--QTTLVASSSDMRLAA 771

Query: 162 IHILSGLLEMSNLGLSKV 179
           I  L  LL   +L + ++
Sbjct: 772 IEQLQKLLAQQSLSIKEL 789


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 135 IASEMKPNEKCHKNIVITISGVSNPLAIHILSGLLEMSNLGL 176
           + S + P   C  NIV+  + V+N L    +  ++E +  G+
Sbjct: 496 VLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYSIIEQNRKGI 537


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,035
Number of Sequences: 5004
Number of extensions: 50103
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 8
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)