Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002497-TA|BGIBMGA002497-PA|undefined
(253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0661 + 5596739-5597047,5597125-5597703 33 0.30
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280... 31 0.68
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 30 2.1
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 30 2.1
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 29 3.6
09_02_0056 + 3691698-3691828,3691950-3692106 28 8.4
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031... 28 8.4
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 13 CETFAQVCLVADYISQNLPNFCYEQIKKSVLEWQAWL-SKINQKNKWHHI-NSPIVWKEM 70
CE +A+ + S +L + Y Q+ + L +K KNKW + N +WK++
Sbjct: 16 CELYAEQVRAGNRPSTHLNSIGYSQVALKFQQRTHLLYTKRQLKNKWDKLRNEYTIWKKL 75
Query: 71 LMKGS 75
L++GS
Sbjct: 76 LIRGS 80
>01_06_0886 +
32725504-32725824,32725905-32726658,32727911-32728033,
32729477-32729535,32731427-32731732,32732006-32732236,
32732332-32732484,32732567-32732836
Length = 738
Score = 31.5 bits (68), Expect = 0.68
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 91 YSYYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCH-KNI 149
Y Y++ +F+ +S + N + +K E+ SK +M + CH KN+
Sbjct: 628 YDYFSLVSFLDASPSLETL-NLDVTNDPMKHESI---LGHSSKSHLRQMAEDHHCHLKNV 683
Query: 150 VIT-ISGVSN--PLAIHILSGLLEMSNLGLSKVYIYDKDCSAEHME 192
IT S + L +IL + + L L +Y YD CS E E
Sbjct: 684 EITGFSSAKSLVELTCYILKNSVSLECLTLDTLYPYDFRCSDERFE 729
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 166 SGLLEMSNL---GLSKVYIYDKDCSAEHMELVERQCNYIMTCNSGKTVKYVEKLGMALTH 222
+G M NL G+ V + D D + C+++ N K+VE+ +AL
Sbjct: 44 TGTEAMKNLVLGGVGSVTVVDVDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALID 103
Query: 223 TN 224
TN
Sbjct: 104 TN 105
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 112 FGQYQEKLKVETFSKPTAEFSKVIASEMKPNEKCHKNIVITISGVSNPLAIHILSGLLEM 171
F +YQ K + SK + S +K N+ + +TIS N +A+ +L G ++
Sbjct: 375 FWEYQLMQKSDNDSK---QLSVTNVKTLKMNDDV---LAVTISPTGNHIAVALLDGAVKF 428
Query: 172 SNLGLSKVYIYDKDCSAEHMELVERQCNYIMTCNSGKTVKYVEKLGMALT 221
SNL K + +M ++ +C G V ++ L ALT
Sbjct: 429 SNLEQDKHKQISIFRQSVYMGKAIIVNIFLASCKLGNAVFTMDSLKFALT 478
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 84 SEFLEYCYSYYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIASEMKPNE 143
++F++ +S FDA A C G Y+E +V + A + I +PN
Sbjct: 157 ADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNN 216
Query: 144 KCHKNI 149
HK I
Sbjct: 217 ATHKRI 222
>09_02_0056 + 3691698-3691828,3691950-3692106
Length = 95
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 61 INSPIVWKEMLMKGSKPVYIGGASEFLEYCYSYYNFDAFMAS 102
+ SP W M ++ S+ V+ G + + Y + N+ AF S
Sbjct: 5 VGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFWLS 46
>04_04_0423 -
25102305-25102489,25102571-25102717,25103079-25103150,
25103305-25103327,25103792-25103863,25104064-25104112,
25104344-25104415,25104880-25104951,25105281-25105352,
25106569-25106640,25106810-25106881,25106974-25107048,
25107324-25107470,25107598-25107805,25108361-25108489,
25108563-25108769
Length = 557
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 162 IHILSGLLEMSNLGLSKVYIYDKDCSAEHME 192
+ ++SGL + L LS+ +YD+ C EH+E
Sbjct: 299 LEVISGLASLVLLNLSRCGVYDEGC--EHLE 327
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,124,416
Number of Sequences: 37544
Number of extensions: 276982
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 8
length of query: 253
length of database: 14,793,348
effective HSP length: 80
effective length of query: 173
effective length of database: 11,789,828
effective search space: 2039640244
effective search space used: 2039640244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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