GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002497-TA|BGIBMGA002497-PA|undefined
         (253 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p pro...    32   0.88 
AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA...    32   0.88 

>AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p protein.
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 93   YYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPT-AEFS---KVIASEMKPNEKCHKN 148
            Y  ++A   +  FC  V     + E L  ET++    A FS   K+IAS +  + +CH  
Sbjct: 1076 YTTYEALNTNEGFCLCVSGTPVFTECLNGETYNSILGACFSSTAKIIASGLCDDRRCHSR 1135

Query: 149  IVITISGVSNPLAIHILSGLLEMSNLGLSKVYIYDKDCSAEHM 191
             V+  +      A++  SG     ++G+S  +I   +C+ EH+
Sbjct: 1136 AVVDATFA----AVNTTSGYCSCQDVGVS-TFI---NCADEHV 1170


>AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA
            protein.
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 93   YYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPT-AEFS---KVIASEMKPNEKCHKN 148
            Y  ++A   +  FC  V     + E L  ET++    A FS   K+IAS +  + +CH  
Sbjct: 1076 YTTYEALNTNEGFCLCVSGTPVFTECLNGETYNSILGACFSSTAKIIASGLCDDRRCHSR 1135

Query: 149  IVITISGVSNPLAIHILSGLLEMSNLGLSKVYIYDKDCSAEHM 191
             V+  +      A++  SG     ++G+S  +I   +C+ EH+
Sbjct: 1136 AVVDATFA----AVNTTSGYCSCQDVGVS-TFI---NCADEHV 1170


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,153
Number of Sequences: 52641
Number of extensions: 492911
Number of successful extensions: 1158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 24,830,863
effective HSP length: 83
effective length of query: 170
effective length of database: 20,461,660
effective search space: 3478482200
effective search space used: 3478482200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)