GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002497-TA|BGIBMGA002497-PA|undefined
         (253 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    31   0.79 
AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p...    30   1.4  
Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z84574-1|CAE54890.1|  577|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL022593-3|CAE54889.1|  921|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL022593-2|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alph...    29   3.2  
Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    28   5.6  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    28   7.4  
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    27   9.8  

>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 85  EFLEYCYSYYNFDAFMASSKFCGLVKNFGQYQEKLKVETFSKPTAEFSKVIAS 137
           EFL++ Y +YN +      ++  +   FG+    LK  T S+P A  ++ +A+
Sbjct: 105 EFLQWFYKFYNANLTTEPEEYDAVGARFGEDLPALKGSTGSRPVAAPARPVAA 157


>AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p450
           family protein 35B1 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 94  YNFDAFMASSKFCGLVKNFGQYQEK-----LKVETFSKPTAEFSKVIASEMKPNEKCHKN 148
           + F+ F+   KFC   +   +Y+EK       V+ F K  + F +   +E+  +    K 
Sbjct: 156 WGFELFLVQKKFCRTFRRIFKYREKFLNSQFPVQNFEKSVSSFRRFSCAEIDADAVNGKT 215

Query: 149 IVIT 152
           IV T
Sbjct: 216 IVHT 219


>Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 34  CYEQIKKSVLEWQAWLSKINQKNKWHHINSP 64
           C+ ++K    E   W   + ++ +WH+ NSP
Sbjct: 462 CFTELKLKESELAEWEKDLTEREQWHNQNSP 492


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 34  CYEQIKKSVLEWQAWLSKINQKNKWHHINSP 64
           C+ ++K    E   W   + ++ +WH+ NSP
Sbjct: 462 CFTELKLKESELAEWEKDLTEREQWHNQNSP 492


>Z84574-1|CAE54890.1|  577|Caenorhabditis elegans Hypothetical
           protein F33E2.2c protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 34  CYEQIKKSVLEWQAWLSKINQKNKWHHINSP 64
           C+ ++K    E   W   + ++ +WH+ NSP
Sbjct: 462 CFTELKLKESELAEWEKDLTEREQWHNQNSP 492


>AL022593-3|CAE54889.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 34  CYEQIKKSVLEWQAWLSKINQKNKWHHINSP 64
           C+ ++K    E   W   + ++ +WH+ NSP
Sbjct: 462 CFTELKLKESELAEWEKDLTEREQWHNQNSP 492


>AL022593-2|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 34  CYEQIKKSVLEWQAWLSKINQKNKWHHINSP 64
           C+ ++K    E   W   + ++ +WH+ NSP
Sbjct: 462 CFTELKLKESELAEWEKDLTEREQWHNQNSP 492


>Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical
           protein T19B10.7 protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 198 CNYIMTCNSGKTVKYVEKLGMALTHTNLLIILDHVLFKYVL--VYIIV 243
           C+   + N  K ++YV +LGM    T+LL  +D  L  Y+L  +Y+++
Sbjct: 388 CHCCASANQ-KHLEYVVELGMLSAFTDLLTCMDVSLVSYILDAIYLLL 434


>AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alpha 1
           protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 198 CNYIMTCNSGKTVKYVEKLGMALTHTNLLIILDHVLFKYVL--VYIIV 243
           C+   + N  K ++YV +LGM    T+LL  +D  L  Y+L  +Y+++
Sbjct: 388 CHCCASANQ-KHLEYVVELGMLSAFTDLLTCMDVSLVSYILDAIYLLL 434


>Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical
           protein T22H6.2b protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 175 GLSKVYIYDKDCSAEH-MELV-ERQCNYIMTCNSGKTVKYVEKLGMA 219
           G+  VYI DKDC  +  +++V + +C+Y   CN+ +T+   + L  A
Sbjct: 578 GVWHVYI-DKDCDEQKAIQIVRDSKCDYPSACNAAETILIHKDLATA 623


>Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical
           protein T22H6.2a protein.
          Length = 800

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 175 GLSKVYIYDKDCSAEH-MELV-ERQCNYIMTCNSGKTVKYVEKLGMA 219
           G+  VYI DKDC  +  +++V + +C+Y   CN+ +T+   + L  A
Sbjct: 576 GVWHVYI-DKDCDEQKAIQIVRDSKCDYPSACNAAETILIHKDLATA 621


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 180 YIYDKDCSAEHMELVERQCNYIMTCNSGKTVKYVEKLGMA 219
           Y++++D S    EL ++Q NY++  N    +  + K  +A
Sbjct: 148 YLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIA 187


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 192  ELVERQCNYIMTCNSGKTVKYVEKLGMALTHTNLLIILDHVLFKYV 237
            E  E +CN IM     K  K  EK+ + L +  L +I+DH +  Y+
Sbjct: 959  ETSEGECNVIMET---KLEKIAEKMDLTLLNRLLRLIVDHNIADYM 1001


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 205 NSGKTVKYV-EKLGMALTHTNLLIILDHVLFKYVLVYI 241
           N GKT  YV   L + L   NL+ ++   +F+Y ++Y+
Sbjct: 78  NFGKTACYVGHMLMLCLLEYNLVWMISSYIFRYYILYV 115


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,471,632
Number of Sequences: 27539
Number of extensions: 268883
Number of successful extensions: 636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 15
length of query: 253
length of database: 12,573,161
effective HSP length: 80
effective length of query: 173
effective length of database: 10,370,041
effective search space: 1794017093
effective search space used: 1794017093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)