GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002496-TA|BGIBMGA002496-PA|IPR006876|LMBR1-like
conserved region
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873...    29   4.6  
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337...    29   6.1  

>01_01_1102 -
           8734984-8736090,8736430-8736557,8736671-8736708,
           8736815-8737030,8737252-8737413,8738381-8738559,
           8738693-8738799,8738918-8739082,8739201-8739284,
           8739364-8739559
          Length = 793

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 42  KPQFLRDLNEEYYMYSFEEETIRRRIDNAVATGVCYISPEPMYSDKGDF----SEPLDLD 97
           K   L DL ++      E E IRR+I N   +      P+P      D     SE L  D
Sbjct: 431 KETLLIDLGQKVNDLEHECEDIRRKIKNLEESMEHLTGPQPTIYSNFDMSHLSSEELKTD 490

Query: 98  VSMCKEKKNAASPGIDKVPLLRLRNGALQ--AGLNERLQKIVAMRKEVENQRKTSSL 152
           VS              ++P       + Q   GLN R   I  ++  V  +R+ SS+
Sbjct: 491 VSSNVRNSKNRREASSRLPRFMKPTASSQHRIGLNNRTPIINRLKPPVPPRRRPSSV 547


>12_01_0428 +
           3374519-3375423,3376663-3376742,3377206-3377217,
           3377337-3377379,3378304-3380332
          Length = 1022

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 49  LNEEYYMYSFEEETIRRRIDNAVATGVCYISPEPMYSDKGDFSEPLDLD--VSMCKEKKN 106
           +NE++  Y F  +++RR   +A A G    S   +  D  D  E +D +   +    K +
Sbjct: 124 INEQHCSYGFSLDSLRRSTADAAALGTMPASARVVVVDADDHDEFVDNNGQATELANKVS 183

Query: 107 AASPGID 113
           A   G+D
Sbjct: 184 ALREGVD 190


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,229,799
Number of Sequences: 37544
Number of extensions: 286198
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 2
length of query: 374
length of database: 14,793,348
effective HSP length: 83
effective length of query: 291
effective length of database: 11,677,196
effective search space: 3398064036
effective search space used: 3398064036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)