GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002496-TA|BGIBMGA002496-PA|IPR006876|LMBR1-like
conserved region
         (374 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)               80   3e-15
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 31   1.2  
SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 29   4.7  
SB_2194| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 271 ILGITNFDLLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNRFKWMA 330
           I GITNFDL+GEFGR++WLGN R++++YN  F      CLV+KFTA+VR  L+ + +  A
Sbjct: 250 ITGITNFDLMGEFGRLDWLGNIRVIIIYNVWFEVATAFCLVNKFTAAVRNALFEQVRLPA 309

Query: 331 DFFS 334
             F+
Sbjct: 310 LMFT 313



 Score = 32.7 bits (71), Expect = 0.50
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 122 NGALQA-GLNERLQKIVAMRKEVENQRKTSSLQRNVVYP 159
           NG  Q  G  ++L+ + + R E+E Q K S+LQRN +YP
Sbjct: 136 NGKTQDHGDLQKLKVLESERLELERQSKASALQRNCIYP 174


>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 103 EKKNAASPGIDKVPLLRLRNGALQAGLNERLQKIVAMR-KEVENQRKTSSLQ 153
           E   A    I + P+L ++NG L  G+N   Q + A+  K   N RK  + Q
Sbjct: 199 EMSQAIEVAIQRAPILHIKNGRLTQGINRFRQMLQALESKATHNLRKILAQQ 250


>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 522

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 307 TLCLVSKFTASVRR-ELYNRFKW-MADFFSVPEDSKTVIDMLSITQLQDRTIAP 358
           TL L+SKFT  +RR EL   + W  + F      S   + + ++  L+D TI P
Sbjct: 232 TLKLISKFTPGLRRLELGEVYPWHFSQFGKCKHASIWCLVLQNLVNLEDLTIGP 285


>SB_2194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 55  MYSFEEETIRRRIDNAVATGVCYI--SPEPMYSDKGDFSEPLDLDVSMCKEKKNAASPGI 112
           M+ F   +I++ ID A+  G   +   P P +S    +SE     +++  ++++  +PG+
Sbjct: 1   MHDFVSNSIKKNIDGALHPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGV 60

Query: 113 DKV 115
            ++
Sbjct: 61  TQL 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,376
Number of Sequences: 59808
Number of extensions: 330944
Number of successful extensions: 2129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2126
Number of HSP's gapped (non-prelim): 5
length of query: 374
length of database: 16,821,457
effective HSP length: 83
effective length of query: 291
effective length of database: 11,857,393
effective search space: 3450501363
effective search space used: 3450501363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)