GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002496-TA|BGIBMGA002496-PA|IPR006876|LMBR1-like
conserved region
         (374 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown prot...   187   3e-47
BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p pro...   186   4e-47
AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA...   186   4e-47
AY122095-1|AAM52607.1|  557|Drosophila melanogaster GH05406p pro...    30   6.0  
AE014298-2224|AAF48515.1|  557|Drosophila melanogaster CG8470-PA...    30   6.0  
U36583-1|AAA87038.1|  401|Drosophila melanogaster Mei-S332 protein.    29   7.9  
AY058633-1|AAL13862.1|  401|Drosophila melanogaster LD33081p pro...    29   7.9  
AE013599-3339|AAF46802.1|  401|Drosophila melanogaster CG5303-PA...    29   7.9  

>AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown
           protein.
          Length = 527

 Score =  187 bits (455), Expect = 3e-47
 Identities = 114/287 (39%), Positives = 154/287 (53%), Gaps = 11/287 (3%)

Query: 42  KPQFLRDLNEEYYMYSFEEETIRRRIDNAVATGVCYISPEPMYSDKGDFSEPLDLDVSMC 101
           +P  LRD+NEE+  +  EE +++R++ +     V         ++ G     + L     
Sbjct: 233 RPMLLRDVNEEFSAFYMEEASVKRKLAHIELHNVSIADA----ANGGRLGNRIGLG---- 284

Query: 102 KEKKNAASPGIDKVPLLRLRNGALQAG---LNERLQKIVAMRKEVENQRKTSSLQRNVVY 158
           + +     P +        +  A+ +    LN+RL+++ + RKE++  R +S+ QR  VY
Sbjct: 285 RGRTFYPQPLLQHSQAHLYQRKAMASDVDELNDRLRELDSERKELDKLRTSSTFQRTFVY 344

Query: 159 PXXXXXXXXXXXXXXXXXXQNTLELLIGIKAVPLSTRQFTLGITSLSKMGWAGATLEAFL 218
           P                  QNTLELLIGIKA+PLSTRQF LGI+SLSK+G  GA LE  L
Sbjct: 345 PLAMLLLLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGISSLSKLGPFGAGLEVRL 404

Query: 219 ILYLHAASLTGLSXXXXXXXXXXXXXXXXXXXXXXLAAVMLAHSTAQPLLVKILGITNFD 278
           I YL A S+ G                            ML  S+A PLL +I+GITNFD
Sbjct: 405 IFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSALPLLSRIIGITNFD 464

Query: 279 LLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNR 325
           LLGEFG IEWLGNF++VLLYN +F  T  LCL +KFTA+VRREL  R
Sbjct: 465 LLGEFGAIEWLGNFQIVLLYNLVFGTTTALCLANKFTATVRRELRAR 511


>BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p
           protein.
          Length = 527

 Score =  186 bits (453), Expect = 4e-47
 Identities = 113/287 (39%), Positives = 154/287 (53%), Gaps = 11/287 (3%)

Query: 42  KPQFLRDLNEEYYMYSFEEETIRRRIDNAVATGVCYISPEPMYSDKGDFSEPLDLDVSMC 101
           +P  LRD+NEE+  +  EE +++R++ +     V         ++ G     + L     
Sbjct: 233 RPMLLRDVNEEFSAFYMEEASVKRKLAHIELHNVSIADA----ANGGRLGNRIGLG---- 284

Query: 102 KEKKNAASPGIDKVPLLRLRNGALQAG---LNERLQKIVAMRKEVENQRKTSSLQRNVVY 158
           + +     P +        +  A+ +    LN+RL+++ + RKE++  R +S+ QR  VY
Sbjct: 285 RGRTFYPQPLLQHSQAHLYQRKAMASDVDELNDRLRELDSERKELDKLRTSSTFQRTFVY 344

Query: 159 PXXXXXXXXXXXXXXXXXXQNTLELLIGIKAVPLSTRQFTLGITSLSKMGWAGATLEAFL 218
           P                  QNTLELLIGIKA+PLSTRQF LGI+SLSK+G  GA LE  L
Sbjct: 345 PLAMLLLLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGISSLSKLGPFGAGLEVCL 404

Query: 219 ILYLHAASLTGLSXXXXXXXXXXXXXXXXXXXXXXLAAVMLAHSTAQPLLVKILGITNFD 278
           I YL A S+ G                            ML  S+A PLL +I+GITNFD
Sbjct: 405 IFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSALPLLSRIIGITNFD 464

Query: 279 LLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNR 325
           LLG+FG IEWLGNF++VLLYN +F  T  LCL +KFTA+VRREL  R
Sbjct: 465 LLGDFGAIEWLGNFQIVLLYNLVFGTTTALCLANKFTATVRRELRAR 511


>AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA
           protein.
          Length = 527

 Score =  186 bits (453), Expect = 4e-47
 Identities = 113/287 (39%), Positives = 154/287 (53%), Gaps = 11/287 (3%)

Query: 42  KPQFLRDLNEEYYMYSFEEETIRRRIDNAVATGVCYISPEPMYSDKGDFSEPLDLDVSMC 101
           +P  LRD+NEE+  +  EE +++R++ +     V         ++ G     + L     
Sbjct: 233 RPMLLRDVNEEFSAFYMEEASVKRKLAHIELHNVSIADA----ANGGRLGNRIGLG---- 284

Query: 102 KEKKNAASPGIDKVPLLRLRNGALQAG---LNERLQKIVAMRKEVENQRKTSSLQRNVVY 158
           + +     P +        +  A+ +    LN+RL+++ + RKE++  R +S+ QR  VY
Sbjct: 285 RGRTFYPQPLLQHSQAHLYQRKAMASDVDELNDRLRELDSERKELDKLRTSSTFQRTFVY 344

Query: 159 PXXXXXXXXXXXXXXXXXXQNTLELLIGIKAVPLSTRQFTLGITSLSKMGWAGATLEAFL 218
           P                  QNTLELLIGIKA+PLSTRQF LGI+SLSK+G  GA LE  L
Sbjct: 345 PLAMLLLLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGISSLSKLGPFGAGLEVCL 404

Query: 219 ILYLHAASLTGLSXXXXXXXXXXXXXXXXXXXXXXLAAVMLAHSTAQPLLVKILGITNFD 278
           I YL A S+ G                            ML  S+A PLL +I+GITNFD
Sbjct: 405 IFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSALPLLSRIIGITNFD 464

Query: 279 LLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNR 325
           LLG+FG IEWLGNF++VLLYN +F  T  LCL +KFTA+VRREL  R
Sbjct: 465 LLGDFGAIEWLGNFQIVLLYNLVFGTTTALCLANKFTATVRRELRAR 511


>AY122095-1|AAM52607.1|  557|Drosophila melanogaster GH05406p
           protein.
          Length = 557

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 338 DSKTVIDMLSITQLQDRTIAPDKAENTDKTAKVEKSE 374
           DSK   + L +TQ   RT+  D    TDK A+ + SE
Sbjct: 86  DSKIPYNALPLTQHYTRTVLEDLPSETDKKAQAKDSE 122


>AE014298-2224|AAF48515.1|  557|Drosophila melanogaster CG8470-PA
           protein.
          Length = 557

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 338 DSKTVIDMLSITQLQDRTIAPDKAENTDKTAKVEKSE 374
           DSK   + L +TQ   RT+  D    TDK A+ + SE
Sbjct: 86  DSKIPYNALPLTQHYTRTVLEDLPSETDKKAQAKDSE 122


>U36583-1|AAA87038.1|  401|Drosophila melanogaster Mei-S332 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 319 RRELYNRFKWMADFFSVPEDSKTVIDMLSITQLQDRTIAPDKAENTDKTA 368
           RR L+N    MA   S P+ S  V +M SI + + RT A  K+ENTD ++
Sbjct: 315 RRSLFNGIGKMAGSTSTPK-SFLVEEMPSI-RTRSRTAANKKSENTDMSS 362


>AY058633-1|AAL13862.1|  401|Drosophila melanogaster LD33081p
           protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 319 RRELYNRFKWMADFFSVPEDSKTVIDMLSITQLQDRTIAPDKAENTDKTA 368
           RR L+N    MA   S P+ S  V +M SI + + RT A  K+ENTD ++
Sbjct: 315 RRSLFNGIGKMAGSTSTPK-SFLVEEMPSI-RTRSRTAANKKSENTDMSS 362


>AE013599-3339|AAF46802.1|  401|Drosophila melanogaster CG5303-PA
           protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 319 RRELYNRFKWMADFFSVPEDSKTVIDMLSITQLQDRTIAPDKAENTDKTA 368
           RR L+N    MA   S P+ S  V +M SI + + RT A  K+ENTD ++
Sbjct: 315 RRSLFNGIGKMAGSTSTPK-SFLVEEMPSI-RTRSRTAANKKSENTDMSS 362


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,368
Number of Sequences: 52641
Number of extensions: 502220
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 11
length of query: 374
length of database: 24,830,863
effective HSP length: 86
effective length of query: 288
effective length of database: 20,303,737
effective search space: 5847476256
effective search space used: 5847476256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)