GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002496-TA|BGIBMGA002496-PA|IPR006876|LMBR1-like
conserved region
         (374 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    87   1e-17
AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    31   1.0  
AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm rece...    30   2.3  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    30   3.1  
AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm rece...    28   9.3  

>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 5/190 (2%)

Query: 140 RKEVENQRKTSSLQRNVVYPXXXXXXXXXXXXXXXXXXQNTLELLIGIKAVPLSTRQFTL 199
           ++ +E Q +   L  ++ +P                   NTL+LL G +++P+  +   +
Sbjct: 526 KRAIEKQGRLVKLFMSLRFPVAAAALLVLTTCSLIMVATNTLKLLFGYRSLPVYAQY--I 583

Query: 200 GITSLSKMGWAGATLEAFLILYLHAASLTGLSXXXXXXXXXXXXXXXXXXXXXXLAAVML 259
            + +    G  GA +E  LI+Y+   S  GL                        ++++L
Sbjct: 584 EVHTRHSFGLFGACIETLLIIYVMITSFVGLYSLPVLRSLRPVRKDTPMPTIIINSSIVL 643

Query: 260 AHSTAQPLLVKILGITNFDLLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVR 319
             ++A P+ V  +G+T FDLLG    ++WLG+FR+V+ YN +F       L ++ TAS+R
Sbjct: 644 VVASALPVAVNTVGMTTFDLLGSHSSLQWLGSFRVVVAYNTLFVVLSVAFLFNQLTASMR 703

Query: 320 RELYNRFKWM 329
           R+++   KW+
Sbjct: 704 RQIW---KWI 710


>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18 protein.
          Length = 1456

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 102 KEKKNAASPGIDKVPLLRLRNGALQAGLNERLQKIVAMRKEVENQRKTSSLQR 154
           K+ KN+     +K      R   LQ  LNE  +K   +RKE+E  +K S+ +R
Sbjct: 939 KDLKNSLKKAENKATKEETRATTLQVQLNELEEKAKVVRKELETLKKKSTEER 991


>AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm
           receptor protein 227 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 287 EWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNRFKWMADFFSVPEDSKTVIDML 346
           EW    +L+   +A+F+  +   L++       ++L   +KW+  + SV E   +++D++
Sbjct: 5   EWSALLKLIQDVSAVFSIVINTFLIALILTKSPKQL-GAYKWLMIYISVFEIFYSILDVV 63

Query: 347 SITQ 350
            + Q
Sbjct: 64  LVPQ 67


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 85  SDKGDFSEPLDLDVSMCKEKKN----AASPGIDKVPLLRLRNGALQAGLNERLQKIVAMR 140
           SD+ D+  P   DVS  KE+ +    +A    + +  L+L+N  L+  L+E+ + +   +
Sbjct: 238 SDRLDYLTPKRKDVSRIKERDDFLQFSAKIIEETMSELKLKNARLERELSEKEELVKVTK 297

Query: 141 KEVENQRKT 149
           +E++  +KT
Sbjct: 298 EELQELQKT 306


>AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 225 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 287 EWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNRFKWMADFFSVPEDSKTVIDML 346
           EW    +LV    A+F+  +   L+        ++L   +KW+  + SV E   +++D++
Sbjct: 5   EWSALLQLVQHSTAVFSIIINTFLIYLILTKSPKQL-GAYKWLMVYISVFEIFYSILDVV 63

Query: 347 SITQ 350
            + Q
Sbjct: 64  LVPQ 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,955
Number of Sequences: 27539
Number of extensions: 268301
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 6
length of query: 374
length of database: 12,573,161
effective HSP length: 83
effective length of query: 291
effective length of database: 10,287,424
effective search space: 2993640384
effective search space used: 2993640384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)