GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002495-TA|BGIBMGA002495-PA|IPR008075|Lipocalin-1
receptor, IPR006876|LMBR1-like conserved region
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0669 - 26084906-26087350                                         28   7.3  

>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 212 RNVMPLDVNKLDFEHKLPSDIIHPLMYPTCYFLQRLINVYH 252
           R V+P  + KL + H L   +   L++P+   +  LIN+ H
Sbjct: 518 RQVLPNTIAKLRYMHVLDFGVCGDLVFPSGEDMSNLINLQH 558


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.146    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,420,282
Number of Sequences: 37544
Number of extensions: 203778
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 1
length of query: 281
length of database: 14,793,348
effective HSP length: 81
effective length of query: 200
effective length of database: 11,752,284
effective search space: 2350456800
effective search space used: 2350456800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)