GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002495-TA|BGIBMGA002495-PA|IPR008075|Lipocalin-1
receptor, IPR006876|LMBR1-like conserved region
         (281 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    85   4e-17
AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine re...    31   0.69 
U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    28   6.4  

>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 19  KFRRRDSEDYFTADEDEVKVYRISLWLCTFXXXXXXXXXXXXXXXIVSNEVLILYPNSYY 78
           + +R+   +   A E++  VYR+S+W+ +                ++  E+L LY  +YY
Sbjct: 89  RLKRKTEREALYAGEEDYFVYRVSVWISSTATATSIGSLTLLPFSVIGVELLQLYDGNYY 148

Query: 79  VKWLNSSLIQGLWNHXXXXXXXXXXXXXPFAYLFSESSGFPGCR---GLKGRVYETFIVX 135
           ++WL+ SLI  LWN+             PF+Y F ES GF   +    +  R+YE   + 
Sbjct: 149 LQWLSYSLIGALWNYVFVLSNVSLFVLLPFSYFFIESQGFSTSKIGNDMTQRIYEAMAIS 208

Query: 136 XXXXXXXXXXXYVISAWIEGDRSGVDALLNLWTYLPFLYSCVSFVGVLMLL 186
                       V+   ++     V  L      LP +YSCVSF+G ++LL
Sbjct: 209 FLFAFVLLCLAEVVLTILD---YPVSFLSITSVNLPLIYSCVSFIGAVLLL 256


>AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine
           receptor, class v protein22 protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 147 YVISAWIEGDRSGVDALLNLWTYLPFLYSCVSFVGVLMLLADN 189
           Y+ S++I  +      ++NL  +LP  Y  +SF+G   +L  N
Sbjct: 251 YLFSSFIFAETGNTAQIVNLRRFLPLAYGTISFIGPFTILIFN 293


>U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical
           protein F35D11.3 protein.
          Length = 617

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 116 SGFPGCRGLKGRV--YETFIVXXXXXXXXXXXXYVISAWIEGDRSGVDALLNLWTYL 170
           +GF G + +K RV   E F V             V+S WIE D S   A ++ W +L
Sbjct: 277 AGFTGYK-MKKRVGAIEEFSVETLSEGVSLSCSLVVSGWIESDTSPDQAFVHQWRHL 332


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 147 YVISAWIEGDRSGVDALLNLWTYLPFLYSCVSFVGVLMLLADN 189
           Y+ S++  G+   ++ ++    Y P +Y  +SF+G   +L  N
Sbjct: 292 YLASSYYSGEIEDMELIVLTRKYFPLVYGTLSFIGPFTILIFN 334


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.146    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,681,005
Number of Sequences: 27539
Number of extensions: 189478
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 4
length of query: 281
length of database: 12,573,161
effective HSP length: 81
effective length of query: 200
effective length of database: 10,342,502
effective search space: 2068500400
effective search space used: 2068500400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)