GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002493-TA|BGIBMGA002493-PA|IPR000994|Peptidase M24,
catalytic core, IPR004545|Proliferation-associated protein 1
         (379 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   10.0 

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 162 VTEAIQKISAEYGCKPIEGMLSHQLK-QFRIDGEKSIIQNPSE 203
           VT  IQ+ + + GC  + G+ S +++  F   G   +   PSE
Sbjct: 337 VTALIQRGTLKKGCLLVSGIASAKVRSMFNDSGNPILKAKPSE 379


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 17/87 (19%), Positives = 34/87 (39%)

Query: 182 LSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCT 241
           L H L       E+ IIQN    +        LE  +     V+    + +    +    
Sbjct: 319 LQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAI 378

Query: 242 IYKKTDEVYQLKLKASRMFYSEVRNKH 268
           + +  DE  QL L+ +   + ++++K+
Sbjct: 379 VDRLMDETNQLTLQETADAFKDLQDKY 405



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 8   EKTIAEDLVVTKYKLAGQIVNRVL 31
           EK +AE LV   +K A +++NR +
Sbjct: 684 EKILAEPLVKEHFKKALELMNRAV 707


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 56  LEETNKVFKKEKDSKKGIAFSTCVSVNN 83
           + E N + + +KD+K+ ++ ST   +NN
Sbjct: 423 MTEYNGLTEPKKDNKRKLSDSTMNKINN 450


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 22  LAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAF 75
           L G++VN   + ++A    +    E  EF      +    + KK   S   ++F
Sbjct: 507 LIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSF 560


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,697
Number of Sequences: 429
Number of extensions: 3392
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 379
length of database: 140,377
effective HSP length: 59
effective length of query: 320
effective length of database: 115,066
effective search space: 36821120
effective search space used: 36821120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)