Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002492-TA|BGIBMGA002492-PA|IPR006575|RWD
(238 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 76 4e-15
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 43 5e-05
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.037
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 30 0.26
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.60
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 1.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 3.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 3.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 4.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 4.2
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 26 5.6
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 26 5.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 7.4
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 25 7.4
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 9.7
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 9.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.7
>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 76.2 bits (179), Expect = 4e-15
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 3/173 (1%)
Query: 10 EVEALDSIYFGDMTVIETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEI 69
E E L+SIY + I F + + PI E + + + YPDE+P ++I
Sbjct: 8 EREILESIYPEEFKCINDSTF-EITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKI 66
Query: 70 DNEENFDNIVDKE--ELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERI 127
E + ++E L +A+ +E LGM M+F+L S +E N + + + I
Sbjct: 67 TFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126
Query: 128 LAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 180
+ + + E E K+F GT VTVESF W+K F+ K E+E+K K L+
Sbjct: 127 EERHRKEAEQENKKFHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALS 179
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 42.7 bits (96), Expect = 5e-05
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 7 QTSEVEALDSIYFGDMTVIETKPF------HKFSIPIKSEGFDDGEGLACHLVFTYTSKY 60
Q +E+EAL +I+ D ++ + H + I + S + L Y
Sbjct: 14 QENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELGRSY 73
Query: 61 PDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 120
P P+I++ N EN N + LL L + K+ LG M+F L S Q++LN+ +
Sbjct: 74 PYVKPVIKLQNGENVLNSQIRF-LLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSDLS 132
Query: 121 KE----REERILAKQKADEEAEL 139
+ EER + + E AE+
Sbjct: 133 SQFASLEEERAVQLKHDRERAEV 155
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.037
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 114 ETWDKVKKEREERI-LAKQKADEEAELKRFEGTRVTVESFLA-WRKQFEIDMGIPAKRER 171
E + K E EER K++ E K G + T S +A +R + E+ K++
Sbjct: 1229 EMYSIAKAENEERFEKEKRRIMSEDRDKLIRGRQKT--SIVAKYRNKRELPEDSDDKQDT 1286
Query: 172 EAKDKNKLTGRELFLQDTTLNESDLKFLDDGDAVKVDE 209
+KDKN L + ++D + E D K DD + +D+
Sbjct: 1287 ASKDKNSLETIDEKMEDASKIEGDAKTGDDNEMEDLDK 1324
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 117 DKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQ----FEIDMGIPAKRERE 172
+K ++ EE L K+K + E +L+ E + E L WRK E DM + E++
Sbjct: 881 EKARRLAEEEALLKEKQERERQLQ--EERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQ 938
Query: 173 AKDKNK 178
+ K K
Sbjct: 939 SGKKKK 944
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.60
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 66 IIEIDNEENFDNIVDKEELL-THLAEQGKENLGMVMVF---TLVSAGQEWLNETWDKVK- 120
++E+DNEE+ D +E L+ THL E ++ + + L+S+G + + +V
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNP 382
Query: 121 --KEREERILAKQKADE-EAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKN 177
K EER L ++K + EAE+K +V + KQ E ++ + + A +K
Sbjct: 383 SAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRL--KQSENELRTRHREMKAALEKQ 440
Query: 178 K 178
K
Sbjct: 441 K 441
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 117 DKVKKEREERI-LAKQKADEEAELKRFEGTRVTVES 151
+K KKEREE++ L ++ AD++AE+ E + T E+
Sbjct: 407 EKKKKEREEQVRLLQESADKDAEMN--EASTATSEN 440
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 146 RVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTGRELFLQDTTLNESDLKFL 199
R E+ + W++ ++ + K EREA D+ K +E L+++ L FL
Sbjct: 684 RAMRETMVFWKRNERVERDLRKKAEREALDRAK---KEEELRESRRQARKLDFL 734
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 90 EQGKENLGMVMVFTLVSAGQEWLNE-TWDKVKKEREERILAKQKADEEAEL 139
EQ V + ++SA E +N+ K +KE EER +A+QK +E+ L
Sbjct: 610 EQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEER-IAQQKREEKRRL 659
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 93 KENLGMVMVFTLVSAGQEWLNETWDKVKKEREERIL--AKQKADEEAELKRFEGTRVTVE 150
KE+L M T +A E +E ++ ++E ER + + + +DEEAELK+ E VE
Sbjct: 27 KEHLRM----TQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVE 82
Query: 151 SFL 153
L
Sbjct: 83 KIL 85
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 122 EREERILAKQKADEEAELKRFEGTR 146
E EER+LA Q+A EE +R E R
Sbjct: 955 EEEERMLAAQRAKEEERERREEEER 979
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 121 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 180
K EE++ A +K + +LK + ++ ESF + K+ A +R KD +
Sbjct: 771 KSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGKRIFKDGRVIV 830
Query: 181 GREL 184
++L
Sbjct: 831 FQQL 834
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 62 DELPIIEIDNEENFDNIVDKEELLT 86
+E+ + ++D++E D ++DK+E+LT
Sbjct: 390 EEVTLEDVDDDEIEDILLDKDEILT 414
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 165 IPAKREREAKDKNKLTGRELFLQDTTLNESDLK 197
+ K++RE K K K G ++ QD++LN ++ K
Sbjct: 127 VKKKKQREKKSKRKY-GNKIDDQDSSLNNNEAK 158
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 114 ETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREA 173
E +K K+E EE+ AK++A+E A+ + E + E + ++ +R+A
Sbjct: 644 EAEEKAKREAEEK--AKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKA 701
Query: 174 KDKNK 178
+++ K
Sbjct: 702 EEEGK 706
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 120 KKEREERILA-KQKADEEAELKR 141
+KERE++ L KQ+ DE+ ELK+
Sbjct: 33 EKEREKKYLQEKQQKDEQRELKK 55
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 195 DLKFLDDGDAVKVDESLFQN 214
D + L+DGD V +D SL+ N
Sbjct: 196 DQRPLEDGDIVNIDVSLYHN 215
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 11 VEALDSIY-FGDMTVIETKPFHKFSIPIKSEGFDDGE 46
V A++++Y G E+ PF K ++P++ F + E
Sbjct: 497 VSAVNTLYGVGSSYTSESFPFSKLTVPVERNSFRETE 533
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 109 QEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRK 157
+E + + V+K+ +E L KQ+ + E E R + + E WR+
Sbjct: 184 EEAFKKALNAVEKQFQEETLQKQRFEREDESSRQKLSAAMNEDIPPWRQ 232
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 113 NETWDKVKKEREERILAKQKADEEAE 138
NET D++K E++E + KQ+ E
Sbjct: 209 NETKDEIKSEKKEPEIKKQEGGSSTE 234
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.133 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,877
Number of Sequences: 5004
Number of extensions: 49615
Number of successful extensions: 143
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 19
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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